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. 2020 Jun 19;10:9958. doi: 10.1038/s41598-020-66604-7

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Circos map of all association signals for salt tolerance in the full population, indica and japonica using GLM, CMLM and FaST-LMM. The colored blocks in each layer from inner to outer represent QTLs detected from in the full population (a), indica subpopulation (b), japonica subpopulation (c) using GLM, and in the same populations (d,e,f) using CMLM and (g,h,i) using FaST-LMM, respectively. Twenty-eight known genes are labeled with black script at the outermost layer; red color represents candidate genes detected in this study.