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. 2020 Jun 19;10:9958. doi: 10.1038/s41598-020-66604-7

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Functional validation of haplotype combinations of OsSTL1 and OsSTL2. (a) STL for different haplotype combinations of OsSTL1 and OsSTL2. Blue color represents superior alleles and yellow color represents inferior alleles. (b) Comparison of the STL trait for salt tolerance among haplotype combinations of OsSTL1 and OsSTL2 in indica and japonica using one-way ANOVA. Green violins represent indica and red violins represent japonica. Different letters indicate significant differences (p < 0.05) detected by one-way ANOVA. Pyramiding of lead SNP of high salt tolerance alleles in the full population (c), indica (d) and japonica (e).