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. 2020 Jun 19;10:10003. doi: 10.1038/s41598-020-66622-5

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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(A) The persistent microbiome is shared between treatments (left) and gut parts (right), as indicated by the Venn diagram. (B) The relative abundance of the persistent microbiome overall consisted of around 60% of the overall abundance, while it increased with antibiotic resistance, especially observed in the midgut and hindgut. (C) Principal Coordinate Analysis based on Jaccard metric on the antibiotic genes’ richness between the persistent and the affected (non-persistent) microbes. P-value (P = 0.0001) indicates significance based on Permanova (Jaccard metric).