Table 6.
Comparison of the deer genome assembly metrics.
| Species | Assembled genome size (ungaped) (Gb) | Genome coverage (×) | Contig N50 (Kb) | Scaffold N50 (Mb) | Number of scaffolds |
|---|---|---|---|---|---|
| Tarim red deer (Cervus elaphus yarkandensis) | 2.60 (2.56) | 63 | 275.5 | 31.7 | 19,010 |
| White-lipped deer (Przewalskium albirostris)15 | 2.69 (2.64) | 214 | 39.6 | 3.8 | 171,874 |
| Chinese water deer (Hydropotes inermis)15 | 2.53 (2.48) | 76 | 131.4 | 13.8 | 22,246 |
| Black muntjac (Muntiacus crinifrons)15 | 2.68 (2.67) | 116 | 8.2 | 1.3 | 21,052 |
| Hog deer (Axis porcinus)17 | 2.68 (2.64) | 197 | 172.8 | 20.6 | 136,093 |
| Milu (Elaphurus davidianus)18 | 2.52 (2.46) | 82 | 32.7 | 3.0 | 46 381 |
| Red deer (Cervus elaphus)19 | 3.40 (1.95) | 62 | 7.9 | 0.27 | 34,724 |
| Reeves muntjac (Muntiacus reevesi)20 | 2.58(2.51) | 34 | 225.1 | 9.4 | 29,705 |
| Muntjak (Muntiacus muntjak)20 | 2.57(2.52) | 41 | 215.5 | - | 25,651 |
| Mule deer (Odocoileus hemionus)22 | 2.34 (2.34) | 25 | 113.3 | 0.8 | 838,758 |
| Reindeer (Rangifer tarandus)23 | 2.64 (2.54) | 220 | 89.7 | 0.94 | 58 765 |
| Eastern roe deer (Capreolus pygargu)24 | 2.61 (2,55) | 77 | - | 6.6 | 92,100 |
| White-tailed deer (Odocoileus virginianus)25 | 2.38 (2.36) | 150 | 122.0 | 0.9 | 17,025 |
| Alces alces (Eurasian elk)26 | 2,74 (2,54) | 35 | 131,8 | 4.1 | 48,219 |