Table 1.
Mapping Statistics of HM-276D and HM-277D Sequenced Dataset
| Mapping Statistics | HM-276D | HM-277D |
|---|---|---|
| # of reads | 8,086,684 | 18,254,839 |
| # of mapped reads | 7,640,934 | 18,110,317 |
| Reads unmapped | 445,750 | 144,522 |
| Reads MQ0 | 60,972 | 103,601 |
| Non-primary alignments | 287,369 | 732,671 |
| Total length | 33,563,573,383 | 72,312,638,112 |
| Bases mapped | 32,143,689,158 | 72,216,146,980 |
| Bases mapped (cigar) | 31,156,025,998 | 70,073,211,829 |
| Mismatches | 4,104,593,752 | 6,925,222,080 |
| Average length | 4,150 | 3,961 |
| Maximum length | 472,762 | 214,792 |
| Average Phred quality per base | 13 | 17 |
Sequenced data were mapped against reference genomes of 20 known bacterial strains. Sequences indicate the number of QC passed reads. Number of mapped and unmapped reads were summarized. MQ0 represents number of mapped reads with MQ = 0. Clipping was ignored when calculating total length, bases mapped. Bases mapped (cigar) provides a more accurate number of mapped bases. Number of mismatches were obtained from NM field of BAM file.