Table 1:

Differentially methylated genes that are also differentially expressed between wheat 3DL genes and Ae tauschii 3 L genes

Parameter	CpG	CHG	CHH
Genes showing differential methylation (q < 0.05) (% total genes)	526 (15%)	169 (5%)	42 (1%)
Genes showing differential methylation and DEGs	64 (12%)	18 (11%)	5 (12%)
Promoters showing differential methylation (q < 0.05) (% total genes)	263 (8%)	85 (3%)	123 (4%)
Promoters showing differential methylation and expression 4-fold	27 (10%)	6 (7%)	17 (13%)