KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Bacterial and Virus Strains | ||
| E. coli BW25113 | CGSC | 7636 |
|
E. coli JW4014-2 (ΔtyrB747::kan) |
CGSC | 10886 |
|
E. coli JW0911-1 (ΔaspC745::kan) |
CGSC | 8924 |
| E. coli BW25113 ΔtyrB/ ΔaspC | (Park et al., 2019) | N/A |
| E. coli MG1655 | CGSC | 6300 |
| E. coli Nissle 1917 | ArdeyPharm | N/A |
| S. enterica serovar Typhimurium | Dr. MacMicking (Yale School of Medicine) | N/A |
| Klebsiella pneumoniae | ATCC | 700603 |
| X. bovienii str. feltiae Moldova | Dr. Heidi Goodrich-Blair (University of Wisconsin-Madison) | N/A |
| V. cholerea El Tor N16961 ΔctxAB | Dr. Waldor (Harvard Medical School) | N/A |
| V. parahaemolyticus | Dr. Waldor (Harvard Medical School) | N/A |
| P. aeruginosa PA01 | Dr. Strobel (Yale University) | N/A |
| E. faecalis | Dr. Kriegel (Yale School of Medicine) | N/A |
| E. gallinarum | Dr. Kriegel (Yale School of Medicine, (Manfredo Vieira et al., 2018)) | N/A |
| L. parafarraginis F0439 | BEI Resources | HM-478 |
| L. rhamnosus LMS2-1 | BEI Resources | HM-106 |
| L. reuteri CF48-3A | BEI Resources | HM-102 |
| B. subtilis BR151 | Dr. Kolter (Harvard Medical School) | N/A |
| S. aureus | ATCC | 23235 |
| P. syringae pv. tomato DC3000 | (Cuppels, 1986) | N/A |
| Biological Samples | ||
| Mouse fecal sample | (Park et al., 2019) | N/A |
| Chemicals, peptides, and Recombinant Proteins | ||
| Paraquat | Acros Organics | Cat # AC227320010 |
| Erythromycin | Acros Organics | Cat # 227330050 |
| L-Cysteine | Alfa Aesar | Cat # J63745 |
| Indole-3-pyruvic acid | Santa Cruz Biotechnology | Cat # SC-218597 |
| ITE | Tocris | Cat # 1803 |
| Kanamycin sulfate | AmericanBio | Cat # AB01100-00010 |
| Rifampicin | Sigma-Aldrich | Cat # R3501-250MG |
| Gentamicin sulfate | Acros | Cat # 455310010 |
| Manganese(IV) oxide | Beantown Chemical | Cat # 129129-100G |
| 4-Hydroxyindole-3-carboxaldehyde | ChemCruz | Cat # sc-262003 |
| DDQ (2,3-dichloro-5,6-dicyano-1,4-benzoquinone) | Alfa Aesar | Cat # A11879 |
| LB | Difco | Cat # 244620 |
| M9 | VWR | Cat # J863-500G |
| Fafard Growing Mix 2 | Sun Gro Horticulture, Vancouver, Canada | N/A |
| Vermiculite | Scotts, Marysville, OH | N/A |
| Critical Commercial Assays | ||
| Human AhR Reporter Assay System | Indigo Biosciences | Cat # IB06001 |
| Experimental Models: Organisms/Strains | ||
| Plant: Arabidopsis thaliana Col-0 | ABRC | Cat # CS1092 |
| S. cerevisiae | ATCC | 9763 |
| Recombinant DNA | ||
| pET-28a (+) | Addgene | Cat # 69864-3 |
| Software and Algorithms | ||
| ChemDraw 19.0 | PerkinElmer | https://www.perkinelmer.com/product/chemoffice-professional-chemofficepro |
| Mnova | Mestrelab Research | https://mestrelab.com/download/mnova/ |
| Prism 8 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
| Adobe Illustrator CC 2018 | Adobe | https://www.adobe.com/products/illustrator.html |
| BioRender | BioRender | biorender.com |
| Others | ||
| Amberlite XAD-7 HP | Acros Organics | Cat # 202245000 |
| Celite | Acros Organics | Cat # 349675000 |