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. Author manuscript; available in PMC: 2021 Jun 18.
Published in final edited form as: Mol Cell. 2020 Jun 1;78(6):1178–1191.e6. doi: 10.1016/j.molcel.2020.05.001
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (E10) Mouse mAb antibody Cell Signaling Technology Cat# 9106S; RRID: AB_331768
p44/42 MAPK (Erk1/2) Antibody Cell Signaling Technology Cat# 9102S; RRID: AB_330744
Phospho-p70 S6 Kinase (Thr389) (108D2) Rabbit mAb Cell Signaling Technology Cat# 9234S; RRID: AB_2269803
Rabbit Anti-p70 S6 Kinase Monoclonal Antibody Cell Signaling Technology Cat# 2708S; RRID: AB_390722
c-MYC antibody Cell Signaling Technology Cat#9402; RRID: AB_2151827
Anti-mouse IgG, HRP-linked Antibody Cell Signaling Technology Cat#7076; RRID: AB_330924
Anti-rabbit IgG, HRP-linked Antibody Cell Signaling Technology Cat#7074; RRID: AB_2099233
Phospho-PFAS T619 Rabbit antibody Cell Signaling Technology In development
PFAS Antibody Bethyl Laboratories A304–218A; RRID: AB_2620417
ATIC Antibody Bethyl Laboratories A304–272A; RRID: AB_2620468
PPAT Antibody Proteintech Group Inc 15401–1-AP; RRID: AB_2166532
GART Antibody Proteintech Group Inc 13659–1-AP; RRID: AB_2107937
ADSL Antibody Proteintech Group Inc 15264–1-AP; RRID: AB_2225668
ADSS Antibody Proteintech Group Inc 16373–1-AP; RRID: AB_2225676
PAICS Antibody Proteintech Group Inc 12967–1-AP; RRID: AB_10638449
IMPDH1 Antibody Proteintech Group Inc Cat#22092–1-AP
IMDPH2 Antibody Proteintech Group Inc 12948–1-AP; RRID: AB_2127351
GMPS Antibody Proteintech Group Inc 16376–1-AP; RRID: AB_2232412
β-actin Antibody Sigma-Aldrich A5316; RRID: AB_476743
Anti-FLAG M2 Sigma-Aldrich F1804; RRID: AB_262044
Bacterial and Virus Strains
NEB Stable Competent E. coli NEB C3040
DH5 alpha Fisher Scientific 18258012
Biological Samples
Chemicals, Peptides, and Recombinant Proteins
U0126 MEK inhibitor Tocris Biosciences 1144
AZD6244 Selleckchem S1008
SCH772984 Selleckchem S7101
EGF (human recombinant) Life Technologies (Gibco) PHG0311
L-glutamine Corning MT25005Cl
13C2-15N-glycine Sigma-Aldrich 489522
13C4-15N-aspartic acid Sigma-Aldrich 607835–250MG
L-glutamine-(amide-15N) Sigma-Aldrich 490024
thiazolyl Blue Tetrazolium Bromide Sigma-Aldrich M5655
DMSO Sigma-Aldrich D2650–100ML
2-mercaptoethanol Sigma-Aldrich M6250–100ML
Hypoxanthine Sigma-Aldrich H9636–1G
Inosine Sigma-Aldrich I4125–1G
1,2-3H-2-deoxy-D-Glucose Perkin-Elmer NET328A250UC
U-14C-glycine Perkin-Elmer NEC276E050UC
U-14C-glucose Perkin-Elmer NEC042V250UC
3-14C-serine Perkin-Elmer NEC853050UC
3H-hypoxanthine Perkin-Elmer NET177001MC
[γ−32P]-ATP Perkin-Elmer BLU002A100UC
14C-formate American Radiolabeled Chemicals ARC 0163A
Polyethylenimine (PEI) Polysciences 23966–2
Opti-MEM media Thermo Fisher 31985062
Glutamine-free DMEM Gibco 11960–044
Geneticin Selective Antibiotic Fisher Scientific 10131035
Lipofectamine 3000 Transfection reagent Invitrogen L3000008
Glucose-free DMEM Invitrogen 11966025
Lipofectamine RNAi max Invitrogen 13778150
DpnI
SuperSignal™ West Femto Chemiluminescent Thermo Fisher scientific PI34096
SuperSignal™ West Pico PLUS Thermo Fisher scientific PI34580
Protein A/G AGAROSE 3ML/PK Thermo Scientific 20421
Recombinant Protein - MAPK3 (ERK1) MRC-PPU 2 – 379
Recombinant Protein - MAPK1 (ERK2) MRC-PPU 2 – 360
DMEM Corning CellGro 10–017-CV
Glycine (and serine)-free DMEM US Biologicals D9800–16
Fetal bovine serum (FBS) Sigma-Aldrich F2442
Dialyzed FBS (dFBS) Sigma-Aldrich F0392
Microcystin-LR Fisher Scientific ALX350012C500
Protease inhibitor cocktail Sigma-Aldrich P8340
Critical Commercial Assays
RNeasy Mini Kit QIAZEN 74104
HiSpeed Plasmid Maxi Kit (25) QIAZEN 12663
AllPrep DNA/RNA Mini Kit QIAZEN 80204
CellTiter-Glo Luminescent Cell Viability Assay Promega G7573
KOD Extreme Hot Start DNA polymerase kit Merck Millipore 71975–3
Deposited Data
A study of Ali, Sahu et al_Unprocessed file Mendeley Data http://dx.doi.org/10.17632/px6zm7ms9r.3
Experimental Models: Cell Lines
HEK293E cells John Blenis lab (Weill Cornell Medicine) N/A
HeLa cells ATCC CCL-2
A549 cells ATCC CCL-185
SKMEL-28 cells ATCC HTB-72
Panc1 cells ATCC CRL-1469
Mouse Embryonic Fibroblasts (MEFs) David Kwiatkowski (Brigham and Women’s Hospital) N/A
Experimental Models: Organisms/Strains
Oligonucleotides
See Table S3 for list of primers used in this study Integrated DNA Technologies
siRNA targeting siMYC Dharmacon L-003282-02-0005
Non-targeting siRNA pool Dharmacon D-001810-10-20
Recombinant DNA
PFAS Human Tagged ORF Clone Origene RC217795
pCMV6-Entry Tagged Cloning Vector Origene PS100001
pLenti-III-PGK vector Applied Biological Materials G305
pCMV6-PFAS-S162A This study NA
pCMV6-PFAS-S215A This study NA
pCMV6-PFAS-T619A This study NA
pCMV6-PFAS-T619D This study NA
pCMV6-PFAS-S215A-T619A This study NA
pLenti-III-PGK-PFAS This study NA
pLenti-III-PGK-PFAS-S215A-T619A This study NA
p3xFlag-CMV7-Erk2-L73P-S151D (ERK2-CA) This study NA
p3xFlag-CMV7-Erk2 KR (ERK2-KD) Addgene 39224
Software and Algorithms
ImageJ Schneider et al., 2012 RRID: SCR_003070
SCANSITE 4.0 Obenauer et al., 2003 https://scansite4.mit.edu/4.0/#cite
Prism 7 Prism https://www.graphpad.com/scientific-software/prism/
Other
Multipurpose Scintillation Counter Beckman Model: LS 6500
Microplate Reader Tecan Infinite M1000 Pro
Nitrocellulose membrane 0.2 μm GE Healthcare 10600001