Table 2.
Gene contents in eight Allium species.
| Category | Group | Name |
|---|---|---|
| Self-replication | Large subunit of ribosome (LSU) | rpl2(2), rpl14, rpl16, rpl20, rpl22, rpl23(2), rpl32, rpl33, rpl36 |
| Small subunit of ribosome (SSU) | rps2 ∗, rps3, rps4, rps7(2), rps8, rps11, rps12(2), rps14, rps15, rps16∗, rps18, rps19(2) | |
| DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | |
| Ribosomal RNA | rrn4.5 (2), rrna5(2), rrn16(2), rrn23(2) | |
| Transfer RNAs (tRNA) | trnA-UGC(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnH-GUG(2), trnI-CAU(2), trnI-GAU(2), trnK-UUU, trnL-CAA(2), trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC, trnW-CCA, trnY-GUA | |
| Photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of NADH-dehydrogenase | ndhA, ndhB(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome b/f complex | petA, petB, petD, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | |
| Large subunit of rubisco | rbcL | |
| Translation initiation factor | infA | |
| Other genes | ATP-dependent protease subunit p gene | clpP |
| Maturase | matK | |
| Envelope membrane protein | cemA | |
| Subunit of acetyl-CoA-carboxylase | accD | |
| C-type cytochrome synthesis gene | ccsA | |
| Hypothetical chloroplast reading frames (ycf) | ycf1(2), ycf2(2), ycf3, ycf4 |
Note: the gene names rps2 and rps16 with ∗ show the missing gene in A. pallasii.