Table 2.
Results of the last 50 ns molecular dynamic simulation for the fusion proteins. Data represent mean ± SD.
Parameters | p28-Linker-IL-24 fusion protein | p28-Linker-M4 fusion protein |
---|---|---|
Protein backbone RMSD | 0.98 ± 0.01 | 1.36 ± 0.08 |
Protein backbone RMSF | 0.43 ± 0.29 | 0.418 ± 0.21 |
Rg | 1.67 ±0.006 | 2.001 ± 0.082 |
Temperature (Kº) | 300.07 ± 1.51 | 299.9 ± 1.66 |
Potential (KJ/mol) | -488416 ± 732.03 | -398516 ± 659.01 |
Total energy (KJ/mol) | -397398.264 ± 900.94 | -324549 ± 813.10 |
Kinetic (KJ/mol) | 91017.55 ± 460.83 | 73969.55 ± 409.59 |
H-bond pro-sol | 369.11 ± 11.56 | 299.30 ± 11.09 |
Solvent accessible surface | 99.69 ± 1.76 | 91.62 ± 2.0291 |
Minimum distance between of two peptides | 0.17 ± 0.01 | 0.20 ± 0.020 |
RMSD, Root mean square deviation; RMSF, root mean square fluctuation; Rg, radius of gyration.