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. 2020 May 11;15(2):200–208. doi: 10.4103/1735-5362.283820

Table 2.

Results of the last 50 ns molecular dynamic simulation for the fusion proteins. Data represent mean ± SD.

Parameters p28-Linker-IL-24 fusion protein p28-Linker-M4 fusion protein
Protein backbone RMSD 0.98 ± 0.01 1.36 ± 0.08
Protein backbone RMSF 0.43 ± 0.29 0.418 ± 0.21
Rg 1.67 ±0.006 2.001 ± 0.082
Temperature (Kº) 300.07 ± 1.51 299.9 ± 1.66
Potential (KJ/mol) -488416 ± 732.03 -398516 ± 659.01
Total energy (KJ/mol) -397398.264 ± 900.94 -324549 ± 813.10
Kinetic (KJ/mol) 91017.55 ± 460.83 73969.55 ± 409.59
H-bond pro-sol 369.11 ± 11.56 299.30 ± 11.09
Solvent accessible surface 99.69 ± 1.76 91.62 ± 2.0291
Minimum distance between of two peptides 0.17 ± 0.01 0.20 ± 0.020

RMSD, Root mean square deviation; RMSF, root mean square fluctuation; Rg, radius of gyration.