Table 10.
Combined RMS Differences and correlations between calculated and experimental NMR backbone N-H relaxation order parameter S2 with the C36m additive, original Drude-2013 and optimized Drude-2019 FF.
PDB | Correlation Coefficients | Average Differences | RMS differences | ||||||
---|---|---|---|---|---|---|---|---|---|
C36m | Drude-2013 | Drude-2019 | C36m | Drude-2013 | Drude-2019 | C36m | Drude-2013 | Drude-2019 | |
1UBQ | 0.78 | 0.54 | 0.64 | −0.02 | −0.06 | −0.02 | 0.10 | 0.13 | 0.09 |
2QMT | 0.59 | 0.35 | 0.39 | 0.08 | −0.19 | 0.02 | 0.15 | 0.25 | 0.14 |
1MJC | 0.76 | 0.71 | 0.78 | −0.47 | −0.22 | −0.14 | 0.48 | 0.30 | 0.23 |
1QX5 | 0.12 | −0.03 | 0.43 | −0.36 | −0.25 | −0.05 | 0.42 | 0.32 | 0.11 |
1IFC | 0.11 | 0.01 | 0.01 | −0.04 | −0.13 | −0.07 | 0.13 | 0.22 | 0.17 |
6LYT | 0.65 | 0.45 | 0.42 | −0.06 | −0.33 | −0.10 | 0.13 | 0.40 | 0.19 |
AVE | 0.50 | 0.34 | 0.45 | −0.15 | −0.20 | −0.06 | 0.24 | 0.27 | 0.16 |
SE | 0.13 | 0.12 | 0.11 | 0.09 | 0.04 | 0.02 | 0.07 | 0.04 | 0.02 |
Averages (AVE) and standard errors (SE) are over the studied proteins.