Skip to main content
. Author manuscript; available in PMC: 2021 May 12.
Published in final edited form as: J Chem Theory Comput. 2020 Apr 27;16(5):3221–3239. doi: 10.1021/acs.jctc.0c00057

Table 2.

Comparison of J-coupling values (Hz) with Drude-2013/Drude-2019 FFs and experimental data (Exp)89 for the (Ala)5 peptide from 500 ns simulations.

Residue index Type Exp Drude-2013 Diff2013 Drude-2019 Diff2019
2 3J(HNHA) 5.59 6.87 1.28 6.98 1.39
2 3J(HNC) 1.13 2.38 1.25 2.22 1.09
2 3J(HAC) 1.85 2.04 0.19 2.07 0.22
2 3J(CC) 0.19 2.56 2.37 2.39 2.20
2 3J(HNCB) 2.30 0.72 −1.58 0.86 −1.44
2 1J(NCA) 11.36 11.64 0.28 11.59 0.23
2 2J(NCA) 9.20 8.71 −0.49 8.71 −0.49
2 3J(HNCA) 0.67 0.84 0.17 0.82 0.15
3 3J(HNHA) 5.74 6.79 1.05 6.88 1.14
3 3J(HAC) 1.86 2.01 0.15 1.99 0.13
3 3J(HNCB) 2.24 0.99 −1.25 1.35 −0.89
3 1J(NCA) 11.26 11.56 0.30 11.45 0.19
3 2J(NCA) 8.55 8.57 0.02 8.49 −0.06
3 3J(HNCA) 0.68 0.81 0.13 0.75 0.07
4 3J(HNHA) 5.98 6.90 0.92 6.95 0.97
4 3J(HNC) 1.15 2.15 1.00 1.68 0.53
4 3J(HAC) 1.89 2.07 0.18 1.98 0.09
4 3J(HNCB) 2.14 0.96 −1.18 1.52 −0.62
4 1J(NCA) 11.25 11.52 0.27 11.25 0.00
4 2J(NCA) 8.40 8.48 0.08 8.31 −0.09
4 3J(HNCA) 0.69 0.80 0.11 0.71 0.02
5 3J(HNHA) 6.54 6.95 0.41 7.31 0.77
5 3J(HNC) 1.16 2.74 1.58 2.50 1.34
5 3J(HAC) 2.19 2.19 0.00 2.50 0.31
5 3J(HNCB) 1.96 0.24 −1.72 0.35 −1.61
5 2J (NCA) 8.27 8.40 0.13 8.01 −0.26
5 3J(HNCA) 0.73 0.86 0.13 0.77 0.04
RMS 0.93 0.85
Residue index χ2 χ2a χ2 χ2a
2 17.92 3.91 15.39 3.3
3 2.28 2.28 1.26 1.26
4 2.08 2.08 0.65 0.65
5 4.75 4.75 4.02 4.02
All 7.41 3.23 5.90 2.28
a

χ2 computed excluding the J3(C,C) of residue index 2, which yields the largest difference.