Table 2.
Comparison of J-coupling values (Hz) with Drude-2013/Drude-2019 FFs and experimental data (Exp)89 for the (Ala)5 peptide from 500 ns simulations.
Residue index | Type | Exp | Drude-2013 | Diff2013 | Drude-2019 | Diff2019 |
---|---|---|---|---|---|---|
2 | 3J(HNHA) | 5.59 | 6.87 | 1.28 | 6.98 | 1.39 |
2 | 3J(HNC) | 1.13 | 2.38 | 1.25 | 2.22 | 1.09 |
2 | 3J(HAC) | 1.85 | 2.04 | 0.19 | 2.07 | 0.22 |
2 | 3J(CC) | 0.19 | 2.56 | 2.37 | 2.39 | 2.20 |
2 | 3J(HNCB) | 2.30 | 0.72 | −1.58 | 0.86 | −1.44 |
2 | 1J(NCA) | 11.36 | 11.64 | 0.28 | 11.59 | 0.23 |
2 | 2J(NCA) | 9.20 | 8.71 | −0.49 | 8.71 | −0.49 |
2 | 3J(HNCA) | 0.67 | 0.84 | 0.17 | 0.82 | 0.15 |
3 | 3J(HNHA) | 5.74 | 6.79 | 1.05 | 6.88 | 1.14 |
3 | 3J(HAC) | 1.86 | 2.01 | 0.15 | 1.99 | 0.13 |
3 | 3J(HNCB) | 2.24 | 0.99 | −1.25 | 1.35 | −0.89 |
3 | 1J(NCA) | 11.26 | 11.56 | 0.30 | 11.45 | 0.19 |
3 | 2J(NCA) | 8.55 | 8.57 | 0.02 | 8.49 | −0.06 |
3 | 3J(HNCA) | 0.68 | 0.81 | 0.13 | 0.75 | 0.07 |
4 | 3J(HNHA) | 5.98 | 6.90 | 0.92 | 6.95 | 0.97 |
4 | 3J(HNC) | 1.15 | 2.15 | 1.00 | 1.68 | 0.53 |
4 | 3J(HAC) | 1.89 | 2.07 | 0.18 | 1.98 | 0.09 |
4 | 3J(HNCB) | 2.14 | 0.96 | −1.18 | 1.52 | −0.62 |
4 | 1J(NCA) | 11.25 | 11.52 | 0.27 | 11.25 | 0.00 |
4 | 2J(NCA) | 8.40 | 8.48 | 0.08 | 8.31 | −0.09 |
4 | 3J(HNCA) | 0.69 | 0.80 | 0.11 | 0.71 | 0.02 |
5 | 3J(HNHA) | 6.54 | 6.95 | 0.41 | 7.31 | 0.77 |
5 | 3J(HNC) | 1.16 | 2.74 | 1.58 | 2.50 | 1.34 |
5 | 3J(HAC) | 2.19 | 2.19 | 0.00 | 2.50 | 0.31 |
5 | 3J(HNCB) | 1.96 | 0.24 | −1.72 | 0.35 | −1.61 |
5 | 2J (NCA) | 8.27 | 8.40 | 0.13 | 8.01 | −0.26 |
5 | 3J(HNCA) | 0.73 | 0.86 | 0.13 | 0.77 | 0.04 |
RMS | 0.93 | 0.85 | ||||
Residue index | χ2 | χ2a | χ2 | χ2a | ||
2 | 17.92 | 3.91 | 15.39 | 3.3 | ||
3 | 2.28 | 2.28 | 1.26 | 1.26 | ||
4 | 2.08 | 2.08 | 0.65 | 0.65 | ||
5 | 4.75 | 4.75 | 4.02 | 4.02 | ||
All | 7.41 | 3.23 | 5.90 | 2.28 |
χ2 computed excluding the J3(C,C) of residue index 2, which yields the largest difference.