Table 3.
Average molecular dipole moment differences (MM-QM, Debye) and average molecular polarizability scaling (MM/QM) of dipeptides with different conformations, using the original Drude-2013 and optimized Drude-2019 FFs.
Drude-2013 | Drude-2019 | ||||
---|---|---|---|---|---|
RESI | Avg Dipole (MM-QM) | Avg Polarizablity (MM/QM) | Avg Dipole (MM-QM) | Avg Polarizablity (MM/QM) | |
ARG | −3.24 | 1.05 | −0.02 | 0.83 | |
ASN | −0.11 | 0.89 | 0.05 | 0.85 | |
ASP | 0.85 | 0.83 | 0.65 | 0.75 | |
CYS | −0.30 | 0.78 | −0.30 | 0.80 | |
GLN | −0.96 | 1.00 | −0.22 | 0.85 | |
GLU | −2.70 | 1.00 | 0.51 | 0.75 | |
HSD | 0.61 | 0.86 | −0.10 | 0.84 | |
HSE | 0.83 | 0.86 | −0.15 | 0.84 | |
HSP | 0.25 | 0.92 | 0.69 | 0.86 | |
ILE | −0.69 | 0.91 | −0.57 | 0.85 | |
LEU | −0.60 | 1.05 | −0.56 | 0.84 | |
LYS | −3.51 | 1.06 | 0.82 | 0.83 | |
MET | −0.35 | 0.98 | −0.24 | 0.81 | |
THR | 0.18 | 0.83 | −0.09 | 0.84 | |
TYR | −0.39 | 0.82 | −0.34 | 0.82 | |
TRP | −0.46 | 0.93 | −0.33 | 0.84 | |
PHE | −0.46 | 0.85 | −0.39 | 0.84 | |
SER | −0.06 | 0.83 | −0.07 | 0.85 | |
Average | −0.62±0.30 | 0.91±0.02 | −0.04±0.10 | 0.83±0.01 |
Errors represent standard errors over the amino acids.