Skip to main content
. Author manuscript; available in PMC: 2021 May 12.
Published in final edited form as: J Chem Theory Comput. 2020 Apr 27;16(5):3221–3239. doi: 10.1021/acs.jctc.0c00057

Table 7.

Average RMS differences and RMS fluctuations of the RMSD with respect to the crystal or NMR structures of the Cα atoms (values in Å)

PDB C36m Drude-2013 Drude-2019
AVG RMSF AVG RMSF AVG RMSF
Number of amino acids < 50 aa
1L2Y 1.67 0.45 5.08 1.10 1.42 0.57
1U0I 6.65 2.19 5.82 1.68 2.02 0.52
1EJG 4.15 0.15 1.54 0.33 1.28 0.13
2RVD 1.07 0.10 4.16 1.07 1.14 0.09
1K43 2.18 0.54 1.64 0.71 2.16 0.17
1LE3 0.89 0.36 5.34 1.37 1.73 0.50
2EVQ 4.37 3.31 4.50 1.80 0.96 0.32
1J4M 2.01 0.44 1.37 0.39 2.05 0.18
GB1 hairpin 2.51 0.45 7.89 2.50 7.29 2.37
AVE 2.83 0.89 4.15 1.22 2.23 0.54
SE 0.62 0.37 0.75 0.24 0.65 0.24
Number of amino acids > 50 aa
1QX5 8.50 2.35 7.91 0.61 7.22 0.58
4IEJ 1.09 0.17 3.72 0.90 2.59 0.34
1MJC 7.84 10.13 2.58 0.72 1.93 0.46
1UBQ 2.31 0.50 3.22 0.58 2.45 0.38
2QMT 0.94 0.28 2.29 0.84 1.48 0.27
1IFC 1.49 0.28 3.03 0.25 2.47 0.55
6LYT 1.36 0.27 3.74 0.98 2.08 0.44
135L 1.74 0.34 2.99 0.27 2.91 0.53
1P7E 0.73 0.20 2.26 0.42 2.00 0.20
2IGD 10.11 8.01 5.78 2.01 1.42 0.23
AVE. 3.61 2.25 3.75 0.76 2.65 0.40
SE 1.16 1.17 0.56 0.16 0.53 0.04

Averages (AVE) and standard errors (SE) are over the studied proteins.