Table 7.
Average RMS differences and RMS fluctuations of the RMSD with respect to the crystal or NMR structures of the Cα atoms (values in Å)
PDB | C36m | Drude-2013 | Drude-2019 | |||
---|---|---|---|---|---|---|
AVG | RMSF | AVG | RMSF | AVG | RMSF | |
Number of amino acids < 50 aa | ||||||
1L2Y | 1.67 | 0.45 | 5.08 | 1.10 | 1.42 | 0.57 |
1U0I | 6.65 | 2.19 | 5.82 | 1.68 | 2.02 | 0.52 |
1EJG | 4.15 | 0.15 | 1.54 | 0.33 | 1.28 | 0.13 |
2RVD | 1.07 | 0.10 | 4.16 | 1.07 | 1.14 | 0.09 |
1K43 | 2.18 | 0.54 | 1.64 | 0.71 | 2.16 | 0.17 |
1LE3 | 0.89 | 0.36 | 5.34 | 1.37 | 1.73 | 0.50 |
2EVQ | 4.37 | 3.31 | 4.50 | 1.80 | 0.96 | 0.32 |
1J4M | 2.01 | 0.44 | 1.37 | 0.39 | 2.05 | 0.18 |
GB1 hairpin | 2.51 | 0.45 | 7.89 | 2.50 | 7.29 | 2.37 |
AVE | 2.83 | 0.89 | 4.15 | 1.22 | 2.23 | 0.54 |
SE | 0.62 | 0.37 | 0.75 | 0.24 | 0.65 | 0.24 |
Number of amino acids > 50 aa | ||||||
1QX5 | 8.50 | 2.35 | 7.91 | 0.61 | 7.22 | 0.58 |
4IEJ | 1.09 | 0.17 | 3.72 | 0.90 | 2.59 | 0.34 |
1MJC | 7.84 | 10.13 | 2.58 | 0.72 | 1.93 | 0.46 |
1UBQ | 2.31 | 0.50 | 3.22 | 0.58 | 2.45 | 0.38 |
2QMT | 0.94 | 0.28 | 2.29 | 0.84 | 1.48 | 0.27 |
1IFC | 1.49 | 0.28 | 3.03 | 0.25 | 2.47 | 0.55 |
6LYT | 1.36 | 0.27 | 3.74 | 0.98 | 2.08 | 0.44 |
135L | 1.74 | 0.34 | 2.99 | 0.27 | 2.91 | 0.53 |
1P7E | 0.73 | 0.20 | 2.26 | 0.42 | 2.00 | 0.20 |
2IGD | 10.11 | 8.01 | 5.78 | 2.01 | 1.42 | 0.23 |
AVE. | 3.61 | 2.25 | 3.75 | 0.76 | 2.65 | 0.40 |
SE | 1.16 | 1.17 | 0.56 | 0.16 | 0.53 | 0.04 |
Averages (AVE) and standard errors (SE) are over the studied proteins.