Table 9.
Average backbone N-H relaxation order parameter S2 in six proteins. Experimental values and calculated S2 from MD simulations with the C36m, Drude-2013 and Drude-2019 FFs are listed.
PDB | Exp | C36m | Drude-2013 | Drude-2019 |
---|---|---|---|---|
1UBQ | 0.83 | 0.81 | 0.77 | 0.81 |
2QMT | 0.73 | 0.81 | 0.54 | 0.75 |
1MJC | 0.82 | 0.35 | 0.60 | 0.68 |
1QX5 | 0.81 | 0.45 | 0.56 | 0.76 |
1IFC | 0.86 | 0.82 | 0.73 | 0.79 |
6LYT | 0.85 | 0.79 | 0.52 | 0.75 |
AVE | 0.82 | 0.67 | 0.62 | 0.76 |
SE | 0.02 | 0.09 | 0.04 | 0.02 |
Averages (AVE) and standard errors (SE) are over the studied proteins.