Table 1.
List of Ni-CODHs and hydrogenases identified in DEGs
| Functional group | Locus tag | Log2FC | Annotation | COG number (category)a |
|---|---|---|---|---|
| CooS2/Ech1 | KKC1_RS06640 | 8.4 | CooM | COG0651,COG1007 (C) |
| CooS2/Ech1 | KKC1_RS06645 | 7.9 | CooK | COG0650 (C) |
| CooS2/Ech1 | KKC1_RS06650 | 9.5 | CooL | COG3260 (C) |
| CooS2/Ech1 | KKC1_RS06655 | 8.8 | CooX | COG1143 (C) |
| CooS2/Ech1 | KKC1_RS06660 | 10.3 | CooU | (C) |
| CooS2/Ech1 | KKC1_RS06665 | 9.0 | CooH | COG3261 (C) |
| CooS2/Ech1 | KKC1_RS06670 | 8.5 | CooF | COG1142 (C) |
| CooS2/Ech1 | KKC1_RS06675 | 7.7 | CooS | COG1151 (C) |
| CooS2/Ech1 | KKC1_RS06680 | 6.0 | CooC | COG3640 (D) |
| CooS6 | KKC1_RS10495 | 6.5 | CooS | COG1151 (C) |
| Hyd-3b | KKC1_RS10615 | 5.0 | Group 3b Ni,Fe-hydrogenase beta subunit | COG1145 (C) |
| Hyd-3b | KKC1_RS10620 | 5.0 | Group 3b Ni,Fe-hydrogenase gamma subunit | COG0543 (C) |
| Hyd-3b | KKC1_RS10625 | 4.8 | Group 3b Ni,Fe-hydrogenase small subunit | COG1941 (C) |
| Hyd-3b | KKC1_RS10630 | 5.8 | Group 3b Ni,Fe-hydrogenase large subunit | COG3259 (C) |
| Hyd-3b | KKC1_RS10635 | 4.8 | Ni,Fe-hydrogenase maturation factor | (O) |
| Hyd-1a | KKC1_RS00385 | − 5.2 | Group 1a Ni,Fe-hydrogenase small subunit | COG1740 (C) |
| Hyd-1a | KKC1_RS00390 | − 4.1 | Group 1a Ni,Fe-hydrogenase large subunit | COG0374 (C) |
| Hyd-1a | KKC1_RS00395 | − 4.8 | Group 1a Ni,Fe-hydrogenase cytochrome b subunit | COG1969 (C) |
| Hyd-1a | KKC1_RS00400 | − 4.1 | Ni,Fe-hydrogenase maturation factor | COG0680 (O) |
aCOG number and category were annotated by EggNOG mapper. Note that some COG categories were annotated, even when COG numbers were not annotated
FC fold change