TABLE 1.
Strains or plasmid | Relevant characteristics or descriptiona |
---|---|
E. coli strains | |
BL21 | E. coli engineering bacterium used as competent cells |
K-12 | Wild-type strain, host bacterium of phage Bp7 |
K-12-R | ΔhldE mutant naturally derived from strain K-12 and resistant to phage Bp7, heptose-less LPS |
K-12C-hldE | Complemented ΔhldE strain, transformed with a pMD19-T vector with cloned hldE |
K-12 ΔlamB | ΔlamB mutant derived from strain K-12, CRISPR-Cas9 technology knockout of lamB gene |
K-12 ΔompC | ΔompC mutant derived from strain K-12, CRISPR-Cas9 technology knockout of ompC gene |
K-12 ΔwaaF | ΔwaaF mutant derived from strain K-12, CRISPR-Cas9 technology knockout of waaF gene |
K-12 ΔompC ΔlamB | ΔompC ΔlamB mutant derived from strain K-12, CRISPR-Cas9 technology knockout of ompC and lamB genes |
K-12-R ΔompC | ΔompC mutant derived from strain K-12-R, CRISPR-Cas9 technology knockout of ompC gene |
K-12-R ΔlamB | ΔlamB mutant derived from strain K-12-R, CRISPR-Cas9 technology knockout of lamB gene |
Plasmids | |
pKDsg-ack | sgRNA plasmid, Specr |
pKDsg-LamB | Derived from sgRNA plasmid, retargeting the lamB gene, Specr |
pKDsg-OmpC | Derived from sgRNA plasmid, retargeting the ompC gene, Specr |
pKDsg-WaaF | Derived from sgRNA plasmid, retargeting the waaF gene, Specr |
pCas9 | CRISPR Cas9 plasmid, expression of Cas9 protein used as cleaving gene, Ampr |
pCold-TF-LamB | Fusion cold shock expression plasmid with a TF chaperone fusion tag, expresses LamB protein, Ampr |
pCold-TF-OmpC | Fusion cold shock expression plasmid with a TF chaperone fusion tag, expresses LamB protein, Ampr |
pCold-TF-gp37 | Fusion cold shock expression plasmid with a TF chaperone fusion tag, expresses gp37 protein, Ampr |
pCold-TF-gp38 | Fusion cold shock expression plasmid with a TF chaperone fusion tag, expresses gp38 protein, Ampr |
pMD19-T-hldE | Cloning plasmid, expression of hldE protein, Ampr |
sgRNA, single guide RNA; Specr, spectinomycin resistance; Ampr, ampicillin resistance.