Table 1:
List of Galaxy tools used
| Tool name | Tool ID | Version | CandiMeth step | Reference |
|---|---|---|---|---|
| Convert delimiters to TAB | convert_characters | 1.0.0 | 2.1 | [30] |
| Add column to an existing dataset | add_value | 1.0.0 | 2.2 | [31] |
| Text transformation with SED | tp_sed_tool | 1.1.1 | 2.3 | [32] |
| Compute an expression on every row | column_maker | 1.2.0 | 2.4 | [33] |
| Merge collections into single list of datasets | __MERGE_COLLECTIONS__ | 1.0.0 | 5 | [34] |
| Relabel list identifiers from contents of a file | __RELABEL_FROM_FILE__ | 1.0.0 | 5.7/9 | [35] |
| Collapse Collection into single dataset in order of collection | collapse_dataset | 4.1.0 | 5.5/5.6 | [36] |
| Paste 2 files side by side | Paste1 | 1.0.0 | 6.1 | [37] |
| Text reformatting using AWK | tp_awk_tool | 1.1.1 | 6.2 | [38] |
| Unique occurences of each record | tp_sorted_uniq | 1.1.0 | 6.3 | [39] |
| Join the intervals of 2 datasets side by side | tp_easyjoin_tool | 1.0.0 | 7 | [40] |
| Group data by a column and perform aggregate operations on other columns | Grouping1 | 2.1.4 | 8 | [41] |