Table 2. The top fifty upregulated transcripts generated from each of the four experiments utilizing ASPS patient data from GSE13433, GSE32569 and GSE54729.
| GSE13433 Patients 1,3,5,6 vs. Skeletal muscle | GSE13433 Patient 4,7 vs. Normal lung | GSE32569 Pre-treatment ASPS vs. Skeletal muscle | GSE54729 Patients vs. Skeletal muscle | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| AFFY ID | FC | GENE ID | AFFY ID | FC | GENE ID | AFFY ID | FC | GENE ID | Ensembl ID | FC | Gene ID |
| 205502_at | 639.7 | CYP17A1 | 207733_x_at | 608.6 | PSG9 | 211470_s_at | 573.8 | SULT1C2 | ENSG00000159871 | 100.9 | LYPD5 |
| 212992_at | 531.8 | AHNAK2 | 209594_x_at | 601.3 | PSG9 | 205502_at | 420.6 | CYP17A1 | ENSG00000183979 | 423.1 | NPB |
| 205445_at | 434.1 | PRL | 205445_at | 572.3 | PRL | 1554018_at | 375.0 | GPNMB | ENSG00000198203 | 237.6 | SULT1C2 |
| 240717_at | 419.0 | ABCB5 | 205502_at | 537.1 | CYP17A1 | 205342_s_at | 367.4 | SULT1C2 | ENSG00000148795 | 1700.4 | CYP17A1 |
| 205342_s_at | 338.7 | SULT1C2 | 1555786_s_at | 510.2 | LINC00520 | 210809_s_at | 365.1 | POSTN | ENSG00000146678 | 200.6 | IGFBP1 |
| 201850_at | 258.8 | CAPG | 206224_at | 467.6 | CST1 | 238720_at | 351.1 | LOC101927057 | ENSG00000172179 | 357.1 | PRL |
| 211470_s_at | 252.9 | SULT1C2 | 223572_at | 437.6 | HHATL | 210587_at | 341.2 | INHBE | ENSG00000169006 | 142.2 | NTSR2 |
| 238720_at | 248.1 | LOC101927057 | 240717_at | 346.4 | ABCB5 | 206214_at | 262.4 | PLA2G7 | ENSG00000101197 | 113.9 | BIRC7 |
| 1554018_at | 240.8 | GPNMB | 208555_x_at | 322.5 | CST2 | 212992_at | 259.6 | AHNAK2 | ENSG00000170369 | 345.4 | CST2 |
| 205302_at | 207.6 | IGFBP1 | 236972_at | 277.8 | TRIM63 | 1565162_s_a | 241.7 | MGST1 | ENSG00000100167 | 143.8 | SEPT3 |
| 204638_at | 198.2 | ACP5 | 1553663_a_at | 259.2 | NPB | 229831_at | 228.7 | CNTN3 | ENSG00000204632 | 396.4 | HLA-G |
| 206899_at | 170.8 | NTSR2 | 205302_at | 255.8 | IGFBP1 | 200832_s_at | 225.4 | SCD | ENSG00000146070 | 147.4 | PLA2G7 |
| 210587_at | 170.4 | INHBE | 221051_s_at | 200.5 | NMRK2 | 206899_at | 168.5 | NTSR2 | ENSG00000110492 | 313.0 | MDK |
| 212805_at | 157.6 | PRUNE2 | 206239_s_at | 192.8 | SPINK1 | 205302_at | 159.6 | IGFBP1 | ENSG00000227925 | 134.1 | LOC101929771 |
| 209875_s_at | 150.3 | SPP1 | 210587_at | 184.3 | INHBE | 227180_at | 157.3 | ELOVL7 | ENSG00000170373 | 455.2 | CST1 |
| 1557636_a_at | 145.1 | C7orf57 | 206899_at | 171.9 | NTSR2 | 219648_at | 149.3 | MREG | ENSG00000225328 | 118.5 | LINC01594 |
| 210809_s_at | 144.4 | POSTN | 205551_at | 169.9 | SV2B | 210397_at | 148.0 | DEFB1 | ENSG00000118785 | 260.1 | SPP1 |
| 221577_x_at | 134.0 | GDF15 | 219106_s_at | 149.9 | KLHL41 | 209875_s_at | 147.2 | SPP1 | ENSG00000139269 | 137.6 | INHBE |
| 221008_s_at | 133.2 | ETNPPL | 206799_at | 146.3 | SCGB1D2 | 557636_a_a | 145.3 | C7orf57 | ENSG00000102575 | 190.9 | ACP5 |
| 206214_at | 130.1 | PLA2G7 | 229052_at | 143.1 | ANKRD23 | 205825_at | 139.0 | PCSK1 | ENSG00000185518 | 114.7 | SV2B |
| 209035_at | 122.3 | MDK | 221008_s_at | 142.4 | ETNPPL | 219073_s_at | 138.2 | OSBPL10 | ENSG00000205336 | 129.2 | ADGRG1 |
| 202450_s_at | 121.7 | CTSK | 205342_s_at | 125.6 | SULT1C2 | 205343_at | 132.8 | SULT1C2 | ENSG00000185567 | 246.4 | AHNAK2 |
| 200832_s_at | 121.0 | SCD | 212805_at | 124.7 | PRUNE2 | 555778_a_a | 127.5 | POSTN | ENSG00000136235 | 2756.8 | GPNMB |
| 212806_at | 119.7 | PRUNE2 | 1564758_at | 115.7 | LOC643659 | 221008_s_at | 126.1 | ETNPPL | ENSG00000042493 | 172.1 | CAPG |
| 230067_at | 116.8 | FAM124A | 229831_at | 114.5 | CNTN3 | 231736_x_at | 116.1 | MGST1 | ENSG00000143387 | 1718.2 | CTSK |
| 208555_x_at | 116.8 | CST2 | 209738_x_at | 113.4 | PSG6 | 212805_at | 115.1 | PRUNE2 | ENSG00000030582 | 707.5 | GRN |
| 225275_at | 115.8 | EDIL3 | 233389_at | 107.5 | CFAP61 | 558378_a_a | 108.4 | AHNAK2 | ENSG00000107317 | 354.1 | PTGDS |
| 229831_at | 112.1 | CNTN3 | 212992_at | 106.9 | AHNAK2 | 218292_s_at | 98.4 | PRKAG2 | ENSG00000106617 | 161.8 | PRKAG2 |
| 227404_s_at | 111.2 | EGR1 | 233238_s_at | 106.0 | CTB-12O2.1 | 221577_x_at | 94.6 | GDF15 | ENSG00000216490 | 275.5 | IFI30 |
| 212841_s_at | 109.4 | PPFIBP2 | 1569072_s_at | 102.9 | ABCB5 | 218404_at | 94.0 | SNX10 | ENSG00000183696 | 183.0 | UPP1 |
| 216834_at | 108.8 | RGS1 | 206994_at | 87.9 | CST4 | 233748_x_at | 90.8 | PRKAG2 | ENSG00000110092 | 192.1 | CCND1 |
| 208792_s_at | 106.1 | CLU | 239205_s_at | 84.7 | CR1; CR1L | 224918_x_at | 89.1 | MGST1 | ENSG00000212443 | 410.2 | SNORA53 |
| 223362_s_at | 105.2 | SEPT3. | 217871_s_at | 84.7 | MIF | 212070_at | 86.0 | ADGRG1 | ENSG00000185585 | 105.1 | OLFML2A |
| 208791_at | 92.7 | CLU | 226086_at | 83.8 | SYT13 | 205551_at | 85.1 | SV2B | ENSG00000130203 | 285.1 | APOE |
| 1558846_at | 92.7 | PNLIPRP3 | 213175_s_at | 82.5 | SNRPB | 244444_at | 84.5 | PKD1L2 | ENSG00000111412 | 119.3 | C12orf49 |
| 230746_s_at | 92.3 | N/A | 221523_s_at | 81.9 | RRAGD | 208965_s_at | 83.6 | IFI16 | ENSG00000206503 | 1571.8 | HLA-A |
| 218292_s_at | 89.1 | PRKAG2 | 243167_at | 77.0 | ABCB5 | 208146_s_at | 82.8 | CPVL | ENSG00000106066 | 239.3 | CPVL |
| 1565162_s_at | 88.4 | MGST1 | 206372_at | 74.4 | MYF6 | 226847_at | 82.8 | FST | ENSG00000138131 | 108.9 | LOXL4 |
| 205825_at | 83.7 | PCSK1 | 209875_s_at | 70.5 | SPP1 | 223484_at | 80.3 | C15orf48 | ENSG00000118508 | 104.3 | RAB32 |
| 226372_at | 82.7 | CHST11 | 244444_at | 67.3 | PKD1L2 | 234983_at | 78.9 | C12orf49 | ENSG00000174080 | 454.1 | CTSF |
| 202503_s_at | 82.6 | KIAA0101 | 205862_at | 65.9 | GREB1 | 240717_at | 78.3 | ABCB5 | ENSG00000169116 | 207.1 | PARM1 |
| 205343_at | 82.0 | SULT1C2 | 222379_at | 65.8 | KCNE4 | 229177_at | 78.1 | C16orf89 | ENSG00000120885 | 187.0 | MIR6843 |
| 205551_at | 81.7 | SV2B | 1554371_at | 60.2 | PKD1L2 | 205844_at | 75.8 | VNN1 | ENSG00000214435 | 114.9 | AS3MT |
| 1569072_s_at | 81.5 | ABCB5 | 205825_at | 58.2 | PCSK1 | 238376_at | 75.5 | LOC100505564 | ENSG00000130208 | 134.3 | APOC1 |
| 227180_at | 79.8 | ELOVL7 | 222714_s_at | 55.6 | LACTB2 | 205445_at | 73.0 | PRL | ENSG00000100644 | 335.4 | HIF1A |
| 231736_x_at | 79.5 | MGST1 | 218619_s_at | 54.6 | SUV39H1 | 242340_at | 71.7 | N/A | ENSG00000135047 | 458.4 | CTSL |
| 202037_s_at | 76.5 | SFRP1 | 236523_at | 54.3 | LOC285556 | 204285_s_at | 71.3 | PMAIP1 | ENSG00000144136 | 134.6 | SLC20A1 |
| 219648_at | 74.5 | MREG | 1557636_a_at | 53.7 | C7orf57 | 204466_s_at | 71.3 | SNCA | ENSG00000101846 | 109.4 | STS |
| 206685_at | 71.8 | HCG4 | 212070_at | 52.9 | ADGRG1 | 203767_s_at | 70.7 | STS | ENSG00000111775 | 242.3 | COX6A1 |
| 210397_at | 71.0 | DEFB1 | 204830_x_at | 52.8 | PSG5 | 222872_x_at | 70.5 | NABP1 | ENSG00000089101 | 164.4 | CFAP61 |