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. 2020 Feb 14;142(10):4904–4915. doi: 10.1021/jacs.0c00269

Table 1. Binding Affinities of the Cyclic DINNN-PepNats for the hSPSB2 Protein Determined by SPR.

graphic file with name ja0c00269_0008.jpg

entry compound structurea KD (nM)b
1 D10-major [I-FDINNNDap ]G 72 ± 16
2 D9-major [I-FDINNNDab ]G 66 ± 8
3 D8-major [I-FDINNNOrn ]G 282 ± 93
4 D1-major [I-FDINNNK ]G 33 ± 15
5 D15-major [I-fDINNNK ]G >10000
6 D12-major [I-LDINNNK ]G 10 ± 4
7 D12-minor [I-LDINNNK ]G 127 ± 9
8 D2-major [II-FDINNNK ]G 231 ± 43
9 D3-major [III-FDINNNK ]G 309 ± 39
10 D17-major [II-FDINNNDap ]G 1080 ± 76
11 D13-major [I-VDINNNK ]G 15 ± 2
12 D13-minor [I-VDINNNK ]G 78 ± 19
13 D18-major [II-VDINNNK ]G 2.2 ± 0.3
14 D18-minor [II-VDINNNK ]G 139 ± 76
15 D7-major [VII-FDINNNK ]G 3.8 ± 0.5
16 D4-major [IV-FDINNNK ]G 18 ± 7
17 D4-minor [IV-FDINNNK ]G >10000
18 22(53) Ac-KEEKDINNNVKKT 7.1 ± 1.5
19 23(9) Ac-DINNN 237 ± 34
20 24(9) [CVDINNNC] 16 ± 4
21 25(66) [WDINNNβA] 79 ± 10
22 26(14) [VIII-DINNN] 175 ± 6
23 27 [IX-FDINNNK] 87 ± 2
a

[ ] indicates cyclic structure. Dap = diaminopropanoic acid; Dab = diaminobutanoic acid; Orn = ornithine. Lowercase letters indicate d-amino acids; bold residues are N-methylated.

b

KD values are presented in nanomolar (nM) concentration as mean ± standard error of the mean (SEM) of three independent experiments using surface plasmon resonance (SPR) (for selected sensorgrams, see Supplementary Figure S8).