Table 3.
Overview of HCMV genome sequences assembled.
| Patient ID | Strain ID | Size (bp) | Status (no. of gaps) | Mutations* |
|---|---|---|---|---|
| SYD-1 | SYD-SCT1 | 235,917 | Complete | RL5A |
| SYD-2 | SYD-SCT2 | 235,797 | Complete | RL5A |
| GLA-1 | GLA-SOT1 | 236,114a | Incomplete (3) | RL5A, UL1, UL111A, US7 |
| GLA-2 | GLA-SOT2 | 235,742 | Complete | None |
| GLA-3 | GLA-SOT3 | 235,723 | Complete | UL1 |
| GLA-4 | GLA-SOT4 | 235,508 | Complete | None |
| HAN-1 | HAN-SOT1 | 235,636 | Complete | None |
| HAN-2 | ——— | ——— | ——— | ——— |
| HAN-3 | HAN-SOT3 | 234,142a | Incomplete (4) | RL6 |
| HAN-4 | HAN-SOT4 | 235,327 | Complete | RL6, UL1, UL9 |
| HAN-5 | HAN-SOT5 | 235,306 | Complete | RL5A, RL6 |
*
Mutations leading to premature truncation of the protein.
a
These assemblies include gaps that might lead to misestimates of the genome size. No genome sequence was assembled from patient HAN-2 due to poor quality of sequencing libraries.