Table 3.
List of bioactive compounds with binding interaction parameters in the active site of Nsp15 endoribonuclease of the SARS-CoV-2.
S.No. | Ligand | Binding interactionwith the active site of Nsp15 endoribonuclease |
||||||
---|---|---|---|---|---|---|---|---|
Binding energy (Kcal/mol) | H-Bonding | Hydrophobic | Charge center | π-Stacking (Parallel) | π- Stacking (Perpendicular) | π-cation (Interaction) | ||
1 | CID_14982 | −8.3 | His235, Ser294, Cys291, Thr341 | Tyr343 | His235, His250, Lys290 | – | – | His235, His250, Lys290 |
2 | CID_480775 | −8.4 | His250, Ser294, Tyr343, Thr341, Val292 | Lys345, Tyr343, Thr341 | – | Tyr343 | Trp333 | |
3 | CID_503737 | −8.8 | Lys290, Gln245, Leu246, Leu346, Asn278 | Lys290, Tyr343, Val292 | Lys290, His235 | – | – | Lys290, His235 |
4 | CID_5481963 | −9.2 | Lys290, Leu346, Asn278, Lys345, Tyr343 | Tyr343, Val292, Lys345, Phe269 | – | – | – | – |
5 | CID_6442433 | −9.0 | Asp240, Glu340, Ser294 | Thr341, Ser294, Val292 | His235 | Thr341 | – | His235 |
6 | CID_10473311 | −8.3 | His250, Lys290, Asn278, Gly248, Leu346, Ser294, Pro 344 | Trp343, Trp333, Thr341, Lys290, Lys345 | – | Trp343 | – | – |
7 | Lopinavir | −8.3 | His235, Thr341, Glu340 | Thr341, Tyr343, Lys345 | – | Trp333 | Tyr343 | – |
8 | Ribavirin | −6.6 | His235, His250, Thr341, Gln245, Gly248, Lys290, Ser294 | – | – | – | – | – |