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. 2020 Jun 18:1–15. doi: 10.1080/07391102.2020.1779132

Table 3.

List of bioactive compounds with binding interaction parameters in the active site of Nsp15 endoribonuclease of the SARS-CoV-2.

S.No. Ligand Binding interactionwith the active site of Nsp15 endoribonuclease
Binding energy (Kcal/mol) H-Bonding Hydrophobic Charge center π-Stacking (Parallel) π- Stacking (Perpendicular) π-cation (Interaction)
1 CID_14982 −8.3 His235, Ser294, Cys291, Thr341 Tyr343 His235, His250, Lys290 His235, His250, Lys290
2 CID_480775 −8.4 His250, Ser294, Tyr343, Thr341, Val292 Lys345, Tyr343, Thr341 Tyr343 Trp333  
3 CID_503737 −8.8 Lys290, Gln245, Leu246, Leu346, Asn278 Lys290, Tyr343, Val292 Lys290, His235 Lys290, His235
4 CID_5481963 −9.2 Lys290, Leu346, Asn278, Lys345, Tyr343 Tyr343, Val292, Lys345, Phe269
5 CID_6442433 −9.0 Asp240, Glu340, Ser294 Thr341, Ser294, Val292 His235 Thr341 His235
6 CID_10473311 −8.3 His250, Lys290, Asn278, Gly248, Leu346, Ser294, Pro 344 Trp343, Trp333, Thr341, Lys290, Lys345 Trp343
7 Lopinavir −8.3 His235, Thr341, Glu340 Thr341, Tyr343, Lys345 Trp333 Tyr343
8 Ribavirin −6.6 His235, His250, Thr341, Gln245, Gly248, Lys290, Ser294