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. 2020 Jun 23;5(3):e00877-19. doi: 10.1128/mSystems.00877-19

TABLE 1.

Model parameters used for simulations

Parameter Value(s) used
in the simulations
Description Reference(s)
where applicablea
Representative value ranges
and additional references,
where applicable
xmax,ymax 900 μm, 150 μm Physical size of the system N/A
dl, dV 3 μm, 27 μm4 Length and volume of a grid element N/A
Nmax 1.1–8 mg liter−1 Maximum density of substrates
(range of values investigated in this study)
83
Nmax 0.055−0.4 mg liter−1 Well-mixed simulation nutrient availability 84
DN 2.3 × 10−6 cm2 s−1 Diffusivity of substrate 83
h 15 μm Diffusion boundary layer height
KN 1.18 mg liter−1 Half-saturation constant for substrate 35, 85 5−225 for biofilm heterotrophic bacterial biomass, including fecal coliforms, e.g., E. coli (85, 86)
4.86 for Pseudomonas putida F1 on glucose (87)
δE 20 (m h)−1 Erosion constant 36
ms 10−12 g Bacterial mass per cell 88 10−12 for E. coli DSM 613
μsb 14.1 day−1 Maximum growth rate 89 17.8 for E. coli K-12 on glucose (90)
4.8−17.6 for E. coli K-12 on different substrates (91)
6.1 for wastewater heterotrophic bacterial biomass (92)
Smax 200 g liter−1 Maximum active biomass density 93
Y 0.495 Yield of substrate converted to biomass 74 0.69–0.77 for wastewater bacteria (94)
0.41 for E. coli K-12 on glucose (90)
0.41−0.51 for P. putida F1 on glucose (87)
β 120 Phage burst size 8, 95 Bacteriophage T7
DP 3.82 × 10−7 cm2 s−1 Phage diffusivity constant This study Bacteriophage T7
I 0.067−0.12 (ms μm3)−1 s−1 Rate of interaction of phage particles
with biomass particles
This study
δP 0.001−10 (μm2 h)−1 Phage removal rate 8, 95
τ 28.8 min Incubation period before lysis 15 Bacteriophage T7
γ 2.92 h−1 Infection rate per biomass per phage
a

N/A, not available.

b

The maximum growth rate is determined from the model equations as μJ = qJY. qJ is the substrate uptake rate with a value of 28.5 g day−1 as in Lapisdou and Rittman (89).