Table 3.

Common QTLs in two independent genetic backgrounds

QTLs	Backgrounds	C	Position	Nearest markers	No. of EE	Previous reports
qFL-C2-6(+)	CCRI36	2	178.82	NAU2277	1
qFL-C2-6(+)	CCRI45	2	178.82	NAU2277	4
qFL-C7-3(+)	CCRI36	7	92.24	NAU1085	6	Sun et al. (2012), Song et al. (2017), Li et al. (2019b), Jamshed et al. (2016), Deng et al. (2019)
qFL-C7-3(+)	CCRI45	7	92.24	NAU1085	5	Sun et al. (2012), Song et al. (2017), Li et al. (2019b), Jamshed et al. (2016), Deng et al. (2019)
qFL-C15-1(+)	CCRI36	15	43.61	NAU3177	5
qFL-C15-1(+)	CCRI45	15	43.61	NAU3177	8
qFL-C16-2(+)	CCRI36	16	65.97	BNL2634	1	Shen et al. (2005), Li et al. (2019b)
qFL-C16-2(+)	CCRI45	16	65.97	BNL2634	8	Shen et al. (2005), Li et al. (2019b)
qFM-C17-2(−)	CCRI36	17	47.26	NAU2909	6	Zhai et al. (2016)
qFM-C17-2(−)	CCRI45	17	47.26	NAU2909	2	Zhai et al. (2016)
qFS-C7-4(+)	CCRI36	7	92.24	NAU1085	4	Sun et al. (2012), Song et al. (2017), Li et al. (2019b), Jamshed et al. (2016)
qFS-C7-4(+)	CCRI45	7	92.24	NAU1085	3	Sun et al. (2012), Song et al. (2017), Li et al. (2019b), Jamshed et al. (2016)
qFS-C15-3(+)	CCRI36	15	43.61	NAU3177	1	Li et al. (2019b)
qFS-C15-3(+)	CCRI45	15	43.61	NAU3177	4	Li et al. (2019b)
qFS-C16-3(+)	CCRI36	16	65.97	BNL2634	2	Shen et al. (2005), Li et al. (2019b)
qFS-C16-3(+)	CCRI45	16	65.97	BNL2634	3	Shen et al. (2005), Li et al. (2019b)
qFS-C17-3(+)	CCRI36	17	122.79	HAU0195a	2	Li et al. (2019b)
qFS-C17-3(+)	CCRI45	17	122.79	HAU0195a	2	Li et al. (2019b)

No. of EE, No. of environments of QTL expression; C, chromosome; (+), positive additive effect indicated that Hai1 alleles increased the phenotypic trait values; (−), negative additive effect indicated that Hai1 alleles decreased the phenotypic trait values