Table 2.
SCN5A mutations in this cohort
Exon | DNA change | Protein change | Number of patients | Novel | Peak Na+ current reduction | Comments | ExAC | Clinvarc | SCN5A‐specific classification | ACMG‐AMP criteria | |
---|---|---|---|---|---|---|---|---|---|---|---|
BrS+ | BrS− | ||||||||||
Intron 5 | c.611+1G>A | 8 | 1 | No | T | 2 families | 0/41380 | 1P | PP | P | |
9 | c.1045G>A | p.(Asp349Asn) | 3 | 0 | No | ? | 2 families | 2/120416 | 1VUS | VUS FP | VUS |
9 | c.1100G>A | p.(Arg367His) | 1 | 0 | No | 100% | 0/118952 | ‐ | PP | P | |
9 | c.1127G>A | p.(Arg376His) | 6 | 6a | No | 70% | 2 families | 0/107056 | 1P | PP | P |
10 | c.1312A>T | p.(Met438Leu) | 1 | 0 | Yes | ? | 0/117992 | ‐ | PP | VUS | |
15 | c.2268_2271del | p.(Phe756Leufs*8) | 1 | 3 | Yes | T | 0/120482 | ‐ | PP | LP | |
16 | c.2466G>A | p.(Trp822*) | 4b | 2 | Yes | T | c.2465G>A or p.Trp822* described | 0/117272 | ‐ | PP | P |
16 | c.2658T>A | p.(His886Gln) | 4 | 3b | Yes | ? | 3 families | 0/121102 | ‐ | PP | P |
Intron 25 | c.4437+5G>A | 0 | 2 | No | T | 0/39242 | 1VUS | PP | VUS | ||
Intron 27 | c.4813+3_4813+6dup | 13 | 11 | No | T | 8 families | 0/115016 | 1LP | PP | P | |
28 | c.4895G>A | p.(Arg1632His) | 2 | 6 | No | 0%d | 2 families | 1/121382 | ‐ | VUS FP | P |
28 | c.4978A>G | p.(Ile1660Val) | 1 | 1 | No | 100% | 3/121412 | 1LP | VUS‐FP | LP |
BrS, Brugada syndrome; ExAC, exome aggregation consortium; FP, favor pathogenic; LP, likely pathogenic; P, pathogenic; PP, probably pathogenic; T, truncating mutation (introduction of stop codon, frameshift or splice site mutation); VUS, variant of unknown significance.
Two patients reached the composite endpoint.
One patient reached the composite endpoint.
In clinvar, annotations based only on literature are not reported here.
Loss of function of this mutation is based on altered channel kinetics.