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. 2020 Jun 17;10:784. doi: 10.3389/fonc.2020.00784

Table 1.

Primers coordinates of the seven genes evaluated in this study.

Gene Description Primer forward Primer reverse Map ENSEMBL Position UCSC h38 coordinates Amplicon length Position respect to TSS Number of interrogated CpGs
UXT Ubiquitously expressed prefoldin like chaperone GTTTGGGTGTTTTTGGGTGGT TCCAATTTAACCTCACACACAATTCAT Xp11.3 ENSG00000126756 Exon 1 ChrX + strand: 47658973-47659103 130 +78 6
HDAC6 Histone deacetylase 6 TTGAGAAAGGGGTTGYGTTT CTACCCCRTTCCTTCAACCA Xp11.23 ENSG00000094631 5′UTR/exon1 ChrX + strand: 48801912–48802085 174 −781 15
AR Androgen Receptor GAGGAGTTTTTTAGAATTTGTTTTAGAG AAAAACCATCCTCACCCTACTACTAC Xq11-12 ENSG00000169083 Exon 1 ChrX strand+: 67545205-67545435 231 1,169 9
MAGEC1 MAGE family member C1 TAGTAGGGTTTAGGGAGTGAGTAGAAA TCAAAATTAATCAAAACTAACAACCC Xq27.2 ENSG00000155495 Promoter ChrX + strand: 141903673-141903833 161 −1,400 7
MAGEC2 MAGE family member C2 TGTTGGATTTTATTATTTATATTTTTGTTG AAACTTCCTCCTCTTCCTCATCTATA Xq27.2 ENSG00000046774 Exon 3 ChrX – strand: 142203870-142204050 181 −63 8
MAGEA11 MAGE family member A11 GGGAGGATTGAGGTATTTTTATGAT ACTTCCCTAAATTTACAACAAAAAC Xq28 ENSG00000185247 intron1-2 ChrX + strand: 149711859-149712030 172 22,883 15
MAGEA2 MAGE family member A2 TTTTTGTYGTGAATTTAGGGAAG AATAAAACCCRCCTCAATCC Xq28 ENSG00000268606 Exon 1 ChrX – strand: 152753752-152753935; ChromX + strand: 152714535-152714718 184 −57 16
FLNA filamin A TGGAAGAAGATTTAGTAGAATATTTTTA CTTCTAACTAAACACCTCCAACAAC Xq28 ENST00000369850.10 Exon2 ChrX – strand: 154370985-154371125 141 +365 12

Map: chromosome mapping of the gene.

Ensembl: Transcript ID in www.ensembl.org~website.

UCSC h38 coordinates: chromosome number and human genome 38 coordinates.

Position respect to TSS: number of bases from the Transcriptional Start Site.