Table 1.
Primers coordinates of the seven genes evaluated in this study.
| Gene | Description | Primer forward | Primer reverse | Map | ENSEMBL | Position | UCSC h38 coordinates | Amplicon length | Position respect to TSS | Number of interrogated CpGs |
|---|---|---|---|---|---|---|---|---|---|---|
| UXT | Ubiquitously expressed prefoldin like chaperone | GTTTGGGTGTTTTTGGGTGGT | TCCAATTTAACCTCACACACAATTCAT | Xp11.3 | ENSG00000126756 | Exon 1 | ChrX + strand: 47658973-47659103 | 130 | +78 | 6 |
| HDAC6 | Histone deacetylase 6 | TTGAGAAAGGGGTTGYGTTT | CTACCCCRTTCCTTCAACCA | Xp11.23 | ENSG00000094631 | 5′UTR/exon1 | ChrX + strand: 48801912–48802085 | 174 | −781 | 15 |
| AR | Androgen Receptor | GAGGAGTTTTTTAGAATTTGTTTTAGAG | AAAAACCATCCTCACCCTACTACTAC | Xq11-12 | ENSG00000169083 | Exon 1 | ChrX strand+: 67545205-67545435 | 231 | 1,169 | 9 |
| MAGEC1 | MAGE family member C1 | TAGTAGGGTTTAGGGAGTGAGTAGAAA | TCAAAATTAATCAAAACTAACAACCC | Xq27.2 | ENSG00000155495 | Promoter | ChrX + strand: 141903673-141903833 | 161 | −1,400 | 7 |
| MAGEC2 | MAGE family member C2 | TGTTGGATTTTATTATTTATATTTTTGTTG | AAACTTCCTCCTCTTCCTCATCTATA | Xq27.2 | ENSG00000046774 | Exon 3 | ChrX – strand: 142203870-142204050 | 181 | −63 | 8 |
| MAGEA11 | MAGE family member A11 | GGGAGGATTGAGGTATTTTTATGAT | ACTTCCCTAAATTTACAACAAAAAC | Xq28 | ENSG00000185247 | intron1-2 | ChrX + strand: 149711859-149712030 | 172 | 22,883 | 15 |
| MAGEA2 | MAGE family member A2 | TTTTTGTYGTGAATTTAGGGAAG | AATAAAACCCRCCTCAATCC | Xq28 | ENSG00000268606 | Exon 1 | ChrX – strand: 152753752-152753935; ChromX + strand: 152714535-152714718 | 184 | −57 | 16 |
| FLNA | filamin A | TGGAAGAAGATTTAGTAGAATATTTTTA | CTTCTAACTAAACACCTCCAACAAC | Xq28 | ENST00000369850.10 | Exon2 | ChrX – strand: 154370985-154371125 | 141 | +365 | 12 |
Map: chromosome mapping of the gene.
Ensembl: Transcript ID in www.ensembl.org~website.
UCSC h38 coordinates: chromosome number and human genome 38 coordinates.
Position respect to TSS: number of bases from the Transcriptional Start Site.