Table 6. Details of each SARS-CoV-2 positive isolate from all HCWs and household contacts in the study.
| Patient ID | Type | HCW_ward | Ct value | Seq Attempted | Seq_ID | % Sequence Coverage | Average Seq Depth | PANGOLIN lineage |
|---|---|---|---|---|---|---|---|---|
| C1 | Symptomatic Contact | HCW Contact | 23.9 | Y | CAMB-7FBB0 | 99.61 | 2048.5 | B.1 |
| C3 | Symptomatic Contact | HCW Contact | 23 | N | Not available | |||
| H3 | Asymptomatic | B | 31 | Y | CAMB-7C0C3 | 98.61 | 835.084 | B.1 |
| H54 | Symptomatic | B | 35 | |||||
| H12 | Symptomatic | C | 16 | Y | CAMB-7FB92 | 99.60 | 3312.22 | B.1 |
| H19 | Asymptomatic | E | 27 | Y | CAMB-7FC26 | 99.61 | 3632.26 | B.1.1 |
| C2 | Asymptomatic | F | 15.5 | Y | CAMB-7FC08 | 99.60 | 3157.08 | B.1 |
| H17 | Asymptomatic | F | 33.6 | Y | CAMB-7FBFC | 99.61 | 1167.76 | B.1 |
| H20 | Asymptomatic | F | 18 | Y | CAMB-7FC35 | 99.61 | 1350.65 | B.1 |
| H21 | Asymptomatic | F | 22.8 | Y | CAMB-7FC44 | 99.60 | 3584.79 | B.1 |
| H22 | Symptomatic | F | 24 | Y | CAMB-7FC53 | 99.60 | 3692.14 | B.1.7 |
| H23 | Asymptomatic | F | 32.7 | Y | CAMB-7FC62 | 99.60 | 1610.33 | B.2.1 |
| H35 | Symptomatic | F | 36 | Y | CAMB-8221F | 73.00 | 104.391 | B.1 |
| H36 | Asymptomatic | F | 29 | Y | CAMB-8222E | 98.59 | 1882.65 | B.1.7 |
| H53 | Symptomatic Contact | HCW Contact | 23 | |||||
| H38 | Asymptomatic | K | 36 | N | Not available | |||
| H39 | Asymptomatic | K | 31 | N | Not available | |||
| H28 | Symptomatic | K/R/L/T/OTHER | 18 | Y | CAMB-7FD32 | 99.60 | 3770.36 | B.1.11 |
| H11 | Asymptomatic | M | 32 | Y | CAMB-7FB83 | 99.60 | 1044.43 | B.1 |
| H32 | Symptomatic | N | 33 | Y | CAMB-81007 | 97.62 | 1196.53 | B.1 |
| H47 | Symptomatic | N | 32 | N | Not available | |||
| H31 | Asymptomatic | O | 29 | Y | CAMB-80FFC | 99.59 | 2286.08 | B.1 |
| H45 | Asymptomatic | O | 36 | N | Not available | |||
| H51 | Symptomatic | O | 33 | |||||
| H57 | Symptomatic Contact | O | 23 | |||||
| H1 | Asymptomatic | OTHER | 23 | Y | CAMB-7C0A5 | 98.61 | 2277.92 | B.1 |
| H6 | Symptomatic | OTHER | 30 | Y | CAMB-7FB29 | 98.75 | 1317.43 | B.1 |
| H7 | Symptomatic | OTHER | 26 | Y | CAMB-7FB47 | 99.61 | 3599.59 | B.1 |
| H10 | Symptomatic | OTHER | 22 | Y | CAMB-7FB74 | 99.60 | 187.059 | B.1 |
| H14 | Symptomatic | OTHER | 34 | Y | CAMB-7FBCF | 99.61 | 1066.74 | B.1 |
| H16 | Asymptomatic | OTHER | 27.8 | Y | CAMB-7FBED | 99.60 | 796.874 | B.1 |
| H24 | Symptomatic | OTHER | 21 | Y | CAMB-7FC80 | 98.62 | 916.884 | B.1 |
| H25 | Symptomatic | OTHER | 21 | Y | CAMB-7FC9F | 99.60 | 1505.09 | B.1 |
| H33 | Symptomatic | OTHER | 35 | Y | CAMB-81016 | 90.92 | 233.779 | B.1 |
| H40 | Symptomatic | OTHER | 23 | N | Not available | |||
| H46 | Asymptomatic | OTHER | 36 | N | Not available | |||
| H55 | Symptomatic | Other | 26 | |||||
| H56 | Asymptomatic | Other | 32 | |||||
| H30 | Asymptomatic | OTHER/K/O/F | 31 | Y | CAMB-80FDE | 98.61 | 1773.74 | B.1 |
| H5 | Symptomatic | Q | 24 | Y | CAMB-7C1A2 | 97.75 | 2342.24 | B.1 |
| H8 | Symptomatic | Q | 14 | Y | CAMB-7FB56 | 99.60 | 2452.25 | B.1 |
| H18 | Asymptomatic | Q | 30 | Y | CAMB-7FC17 | 99.60 | 2585.89 | B.1 |
| H29 | Asymptomatic | Q | 31 | Y | CAMB-80AFB | 99.60 | 2028.31 | B.1 |
| H42 | Asymptomatic | Q | 35 | N | Not available | |||
| H44 | Asymptomatic | Q | 28 | N | Not available | |||
| H48 | Asymptomatic | Q | 36 | N | Not available | |||
| H49 | Asymptomatic | Q | 35 | N | Not available | |||
| H4 | Symptomatic | R | 24 | Y | CAMB-7C0D2 | 98.74 | 2083.89 | B.1 |
| H9 | Symptomatic | R | 19 | Y | CAMB-7FB65 | 99.61 | 3288.11 | B.1 |
| H13 | Symptomatic | R | 21 | Y | CAMB-7FBA1 | 99.60 | 3307.61 | B.1 |
| H27 | Asymptomatic | R | 25 | Y | CAMB-7FCBD | 98.61 | 1085.78 | B.1 |
| H34 | Symptomatic | R | 30 | Y | CAMB-81025 | 99.60 | 1997.98 | B.1 |
| H37 | Asymptomatic | R | 35 | N | Not available | |||
| H52 | Asymptomatic | R | 34 | |||||
| H58 | Symptomatic | R/S/A/Q/P/L/N/M/K/Other | 24 | |||||
| H15 | Symptomatic | S/N | 32 | Y | CAMB-7FBDE | 99.60 | 2246.43 | B.1.7 |
| H41 | Asymptomatic | S/Q | 31 | N | Not available | |||
| H2 | Asymptomatic | T | 36 | Y | CAMB-7C0B4 | 93.55 | 293.223 | B.1 |
| H26 | Asymptomatic | T | 32 | Y | CAMB-7FCAE | 0.03 | 0.189437 | Not available |
| H50 | Symptomatic | T | 34 | N | Not available | |||
| H43 | Asymptomatic | U | 32 | N | Not available |