Table 4.
The raw, chimera detection, and quality filter reads derived from distillery sludge samples (a) illumina MiSeq sequencing raw reads, (b) pre-processing of sequence read data and (c) summary of singleton OTUs
Sample | Total reads | Passed conserved region filter | Passed mismatch filter |
---|---|---|---|
(a) | |||
DS1 | 1,191,014 | 1,191,014 | 1,189,451 |
DS2 | 901,757 | 901,757 | 900,797 |
Sample | Consensus read | Chimeric sequences | Pre-processed reads |
---|---|---|---|
(b) | |||
DS1 | 1,189,451 | 113,453 | 1,075,931 |
DS2 | 900,797 | 72,237 | 828,560 |
(c) | |||
Total reads | 1,904,491 | ||
Total OTUs picked | 621,897 | ||
Total singleton OTUs | 539,635 | ||
Total OTUs after singleton removal | 8226 |
DS1 non-rhizospheric distillery sludge, DS2 rhizospheric distillery sludge