Table 1.
D. radiodurans genes putatively involved in natural transformation.
| Protein function | Protein | Gene (White et al., 1999) | Gene (Hua and Hua, 2016) |
|---|---|---|---|
| The competence pseudopilus | |||
| Inner membrane subcomplex of type IV pili | PilM | dr0770 | A2G07_09655 |
| Inner membrane subcomplex of type IV pili | PilN | dr0771 | A2G07_09650 |
| Inner membrane subcomplex of type IV pili | PilO | dr0772 | A2G07_09645 |
| Inner membrane subcomplex of type IV pili | PilP | dr0773 | A2G07_09640 |
| Secretin | PilQ | dr0774 | A2G07_09635 |
| Pilin or pseudopilin (type IV) |
Pilin pilIV |
dr0548 | none |
| Pilin or pseudopilin (type IV) |
Pilin pilIV |
dr1232 | A2G07_07365 |
| Pilin or pseudopilin (type I) | FimA | None | A2G07_02580 |
| Prepilin/peptidase | PilD | dr2065 | A2G07_03280 |
| Pilus retraction | PilT | dr1963 | A2G07_03820 |
| Pilus extension | PilB | dr1964 | A2G07_03815 |
| DNA translocation machinery | |||
| DNA receptor | ComEA | dr0207 | A2G07_12495 |
| ComEA | dr1855 | A2G07_04330 | |
| Membrane channel | ComEC | dr1854 | A2G07_04335 |
| ComEC | dr0361 | A2G07_11730 | |
| ATP-binding protein | ComF | dr1389 | A2G07_06600 |
| ATP-binding protein | ComA | dr0847 | A2G07_09275 |
| Processing DNA | |||
| DprA | DprA | dr0120 | A2G07_12915 |
| Single stranded DNA binding protein | DdrB | dr0070 | A2G07_00040 |
| Complex RecFOR | RecF | dr1089 | A2G07_08075 |
| Complex RecFOR | RecO | dr0819 | A2G07_09415 |
| Complex RecFOR | RecR | dr0198 | A2G07_12540 |
| Homologous recombination | |||
| Recombinase | RecA | dr2340 | A2G07_01875 |