TABLE 2.
Pairwise distances between the closed genome of strain B11221, representative strains from the other clades of C. auris, strain LOM, and the four new isolates, LOM-2 through LOM-5
| Strain or isolate | Pairwise distance (SNPs) from strain: |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| B11221.V1 | IFRC2087a | LOM-5 | LOM-4 | LOM-3 | LOM-2 | LOM | B8441b | B12631c | B12043d | B11843e | |
| B11221.V1 | 0 | 288,869 | 14 | 7 | 9 | 5 | 25 | 48,355 | 252 | 68,583 | 181,849 |
| IFRC2087a | 288,869 | 0 | 288,873 | 288,866 | 288,872 | 288,868 | 288,886 | 291,362 | 289,014 | 295,204 | 303,779 |
| LOM-5 | 14 | 288,873 | 0 | 17 | 21 | 15 | 23 | 48,365 | 266 | 68,591 | 181,857 |
| LOM-4 | 7 | 288,866 | 17 | 0 | 12 | 8 | 30 | 48,354 | 251 | 68,580 | 181,846 |
| LOM-3 | 9 | 288,872 | 21 | 12 | 0 | 12 | 32 | 48,358 | 255 | 68,586 | 181,852 |
| LOM-2 | 5 | 288,868 | 15 | 8 | 12 | 0 | 26 | 48,358 | 255 | 68,582 | 181,850 |
| LOM | 25 | 288,886 | 23 | 30 | 32 | 26 | 0 | 48,374 | 277 | 68,598 | 181,868 |
| B8441b | 48,355 | 291,362 | 48,365 | 48,354 | 48,358 | 48,358 | 48,374 | 0 | 48,537 | 72,515 | 183,109 |
| B12631c | 252 | 289,014 | 266 | 251 | 255 | 255 | 277 | 48,537 | 0 | 68,707 | 181,969 |
| B12043d | 68,583 | 295,204 | 68,591 | 68,580 | 68,586 | 68,582 | 68,598 | 72,515 | 68,707 | 0 | 187,035 |
| B11843e | 181,849 | 303,779 | 181,857 | 181,846 | 181,852 | 181,850 | 181,868 | 183,109 | 181,969 | 187,035 | 0 |
a
IFRC2087 represents the Iranian clade (clade V).
b
B8441 is a strain from the South Asian clade (clade I).
c
B12631 is an African clade (clade III) strain collected in the United States.
d
B12043 is a strain from the East Asian clade (clade II).
e
B11843 is a strain from the South American clade (clade IV).