Table 1.
Diurnal expression characteristics of syntenic circadian clock and circadian clock-associated genes
| CT Phasea, hours | Amplitudea, FPKM | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Atb | Sb | Zm1 | Zm2 | Si | Sb | Zm1 | Zm2 | Si |
| LYL1/LHYL2 | 23 | 0 | 1.5 | 0 | 0 | 218.1 | 33.8 | 31.9 | 385.7 |
| RE2L | 20 | 0 | 21 | -c | 22.5 | 52.6 | 18.8 | – | 65.0 |
| RE6L1 | ndd | 21 | 21 | – | 21 | 8.4 | 1.3 | – | 4.8 |
| RE6L2/RE6L3 | nd | nre | nr | nr | 18 | nr | nr | nr | 3.7 |
| RE6L4/RE6L5 | nd | 22.5 | 21 | 22.5 | 21 | 24.4 | 3.0 | 18.1 | 44.4 |
| RE7L1/RE7L2 | nd | 19.5 | 18 | 14.7 | 19.5 | 1.9 | 2.3 | 0.8 | 1.8 |
| RE7L3/RE7L4 | nd | 15 | 16.5 | 18 | 13.5 | 10.8 | 23.3 | 18.9 | 37.5 |
| T1L1/T1L2 | 13 | 10.5 | 12 | 9 | 9 | 9.5 | 5.9 | 1.1 | 5.6 |
| P59L1 | 8 | – | 7.5 | – | – | – | 2.2 | – | – |
| P59L2 | 8 | 8.3 | – | 9 | 7.5 | 14.3 | – | 3.4 | 10.2 |
| P73L | 7 | 6 | – | 4.5 | 4.5 | 74.3 | – | 45.3 | 66.9 |
| P95L1/P95L2 | 5 | 6 | 6 | 7.5 | 6 | 21.0 | 16.0 | 2.5 | 45.2 |
| GI2/1 | 8 | 9 | 7.5 | 9 | 7.5 | 120.4 | 13.0 | 103.1 | 135.2 |
| EF3L1 | 14 | 21 | 20.3 | – | 19.5 | 10.8 | 6.8 | – | 11.0 |
| EF3L2 | 16 | 16.5 | 15 | – | 13.5 | 27.9 | 12.1 | – | 16.2 |
| EF4R1/2 | 11 | 9 | 7.5 | nr | 7.5 | 14.5 | 9.4 | nr | 35.9 |
| EF4R3 | 11 | nr | nr | – | nr | nr | nr | – | nr |
| EF4R4 | 11 | 10.6 | 13.5 | – | 9.0 | 0.6 | 1.5 | – | 1.5 |
| LXL | 11 | 12 | – | 10.5 | 10.5 | 4.7 | – | 5.6 | 12.9 |
| ZLL1/ZLL2 | nr | 16.5 | nr | 10.5 | 16.5 | 7.8 | nr | 1.7 | 4.8 |
| ZLL3/ZLL4 | nr | 0 | 0 | nr | 15 | 10.3 | 4.5 | nr | 3.1 |
| FFL1/FFL2 | 11 | 7.5 | 8.3 | 9 | 7.5 | 3.8 | 2.3 | 7.2 | 8.3 |
aValues are from JTK_Cycle analysis in Tables S2-S4 for sorghum (Sb), maize subgenome 1 (Zm1), maize subgenome 2 (Zm2), and foxtail millet (Si) genes
bPhase values for orthologous Arabidopsis (At) genes plants under light-dark photocycles and hot-cold temperature cycles (LDHC) from reference [37]
cNo syntenic gene
dNot determined
eExpression not rhythmic