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. 2020 Jun 25;15(6):e0235218. doi: 10.1371/journal.pone.0235218

Table 2. Forty annotated differentially expressed genes in LL muscle identified between Holstein steers and bulls.

Gene ID Official Full Name Gene Symbol Chr Position log2 Fold Change (steers/bulls) P-Value
ENSBTAG00000000448 3-hydroxybutyrate dehydrogenase 1 BDH1 1 72572941–72608810 1.8192 6.45E-04
ENSBTAG00000002151 ankyrin repeat and SOCS box containing 15 ASB15 4 88697392–88729365 1.7126 6.98E-05
ENSBTAG00000002527 zinc finger SWIM-type containing 4 ZSWIM4 7 12959854–12977638 -1.7474 4.06E-04
ENSBTAG00000003403 peptidyl arginine deiminase 2 PADI2 2 136049644–136103406 1.88 1.06E-05
ENSBTAG00000005847 Rho associated coiled-coil containing protein kinase 2 ROCK2 11 86501577–86583652 -1.534 4.61E-04
ENSBTAG00000005857 solute carrier family 6 member 1 SLC6A1 22 55695783–55714644 1.716 1.53E-04
ENSBTAG00000006754 D-box binding PAR bZIP transcription factor DBP 18 55722336–55729578 1.4405 4.62E-03
ENSBTAG00000007062 insulin like growth factor binding protein 5 IGFBP5 2 105378991–105397646 2.7936 1.53E-02
ENSBTAG00000007131 glutamate decarboxylase like 1 GADL1 22 5258463–5452369 1.7586 2.44E-02
ENSBTAG00000007635 phospholipase C like 1 PLCL1 2 86718341–87086748 1.4057 9.02E-03
ENSBTAG00000008103 aldehyde dehydrogenase 1 family member A1 ALDH1A1 8 49354207–49408166 1.3273 2.22E-02
ENSBTAG00000008353 cyclin dependent kinase inhibitor 1A CDKN1A 23 10560499–10568780 -2.2471 6.56E-09
ENSBTAG00000008807 F-box and leucine rich repeat protein 22 FBXL22 10 46461587–46466076 1.8751 3.71E-03
ENSBTAG00000008866 glucosidase alpha, neutral C GANC 10 37754445–37817713 1.8652 4.84E-05
ENSBTAG00000008940 neuronal pentraxin 1 NPTX1 19 52679104–52685498 -2.0194 4.61E-04
ENSBTAG00000009148 glycoprotein A33 GPA33 3 1726504–1779667 -2.1275 1.30E-02
ENSBTAG00000010389 starch binding domain 1 STBD1 6 92967767–92971371 2.2268 7.38E-09
ENSBTAG00000010419 cytochrome P450 family 2 subfamily R member 1 CYP2R1 15 38420926–38445583 -1.913 9.68E-04
ENSBTAG00000011381 solute carrier family 30 member 3 SLC30A3 11 72364682–72373190 -2.2679 3.70E-04
ENSBTAG00000011548 adenosine monophosphate deaminase 1 AMPD1 3 28756908–28768496 1.8424 6.75E-06
ENSBTAG00000011808 Growth/differentiation factor 8 MSTN 2 6213566–6220196 2.034 2.22E-02
ENSBTAG00000046587 cystatin E/M CST6 29 44766936–44768173 1.8718 1.13E-02
ENSBTAG00000015018 fibronectin type III and SPRY domain-containing protein 2 FSD2 21 23501906–23537791 1.4181 2.39E-03
ENSBTAG00000015402 protein GREB1 GREB1 11 86199420–86268193 -3.9542 4.65E-15
ENSBTAG00000016269 malic enzyme 2 ME2 24 50870262–50928290 -1.622 4.65E-02
ENSBTAG00000016444 reticulophagy regulator 1 RETREG1 20 56709603–56758641 -1.2271 4.16E-02
ENSBTAG00000017765 glutathione S-transferase M2 GSTM2 3 33824401–33834874 1.6982 8.71E-03
ENSBTAG00000016591 RAB11 family interacting protein 3 RAB11FIP3 25 404964–464143 -1.1768 4.52E-02
ENSBTAG00000016676 phosphotriesterase related PTER 13 31202455–31278293 1.3723 1.40E-02
ENSBTAG00000018088 SET binding protein 1 SETBP1 24 45025456–45141793 1.4051 1.53E-02
ENSBTAG00000018204 myosin heavy chain 1 MYH1 19 30110728–30134757 1.988 2.52E-04
ENSBTAG00000019065 endonuclease/exonuclease/phosphatase family domain containing 1 EEPD1 4 61354648–61476979 1.2436 4.40E-02
ENSBTAG00000019954 abhydrolase domain containing 2 ABHD2 21 20998719–21106763 -1.6449 2.11E-02
ENSBTAG00000021151 myosin heavy chain 10 MYH10 19 28680825–28800880 -1.1847 4.97E-02
ENSBTAG00000034411 shisa family member 3 SHISA3 6 62877287–62880849 -1.9731 3.54E-02
ENSBTAG00000037794 myosin heavy chain 4 MYH4 19 30080604–30103436 2.2376 2.03E-05
ENSBTAG00000038584 olfactomedin 1 OLFM1 11 106675880–106712955 1.5765 1.91E-02
ENSBTAG00000039574 nephrocan NEPN 9 33595874–33619430 2.4845 1.53E-04
ENSBTAG00000040126 desmoglein 4 DSG4 24 26038529–26078704 -2.6521 4.61E-04
ENSBTAG00000040398 KIAA1211 ortholog KIAA1211 6 73368358–73396166 2.0568 1.44E-02