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. 2020 Jun 25;15(6):e0234882. doi: 10.1371/journal.pone.0234882

Table 6. QTLs for plant weight (PH), tiller number (TN), shoot fresh weight (SFW) and shoot dry weight (SDW) in the RILs.

Traits QTL Environments Peak position (cM) Marker interval Physical interval (Mb) LOD PVE (%) ADD
PH QPh.saas-1DS 2017GHS 1DS:34 AX-94812958 a - AX-109908110 b 8.97–11.57 4.87 9.17 -1.93
2018GHS 1DS:34 AX-94812958 - AX-109908110 8.97–11.57 4.49 8.15 -2.58
2019GHS 1DS:34 AX-94812958 - AX-109908110 8.97–11.57 4.86 6.91 -2.31
2017CSS 1DS:40 AX-94812958 - AX-110910133 c 8.97–21.51 2.90 7.71 -2.92
2018CSS 1DS:39 AX-94812958 - AX-110910133 8.97–21.51 2.90 7.68 -2.60
QPh.saas-7D 2017GHS 7D:90 AX-109917900 d - AX-110605376 e 324.36–557.58 7.81 14.64 -2.51
2018GHS 7D:91 AX-109937582 f - AX-110605376 549.19–557.58 6.87 12.86 -3.33
2019GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 20.16 34.33 -5.35
2017CSS 7D:90 AX-109917900 - AX-110605376 324.36–557.58 4.08 9.00 -2.75
2018CSS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 5.98 9.77 -3.31
TN QTn.saas-1DS 2017GHS 1DS:33 AX-94812958 - AX-109908110 8.97–11.57 3.36 6.32 -0.73
2018GHS 1DS:37 AX-94812958 - AX-110910133 8.97–21.51 8.82 16.34 -1.82
2019GHS 1DS:34 AX-94812958 - AX-109908110 8.97–11.57 12.39 15.54 -1.54
2017CSS 1DS:38 AX-94812958 - AX-110910133 8.97–21.51 10.26 19.55 -1.32
2018CSS 1DS:35 AX-94812958 - AX-110910133 8.97–21.51 12.93 18.93 -1.42
QTn.saas-7D 2017GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 8.38 16.68 -1.24
2018GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 12.29 18.88 -2.12
2019GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 26.15 38.25 -2.52
2017CSS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 13.51 19.27 -1.46
2018CSS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 19.48 28.66 -1.86
SFW QSfw.saas-1DS 2017GHS 1DS:33 AX-94812958 - AX-109908110 8.97–11.57 3.70 7.51 -8.98
2018GHS 1DS:34 AX-94812958 - AX-109908110 8.97–11.57 6.40 11.31 -11.17
2019GHS 1DS:36 AX-94812958 - AX-110910133 8.97–21.51 7.23 12.63 -10.11
2017CSS 1DS:42 AX-94812958 - AX-110910133 8.97–21.51 2.96 8.03 -8.26
2018CSS 1DS:36 AX-94812958 - AX-110910133 8.97–21.51 4.27 8.71 -10.30
QSfw.saas-7D 2017GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 4.83 9.13 -10.13
2018GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 9.07 16.25 -13.70
2019GHS 7D: 91 AX-109937582 - AX-110605376 549.19–557.58 15.97 26.61 -15.88
2017CSS 7D: 91 AX-109937582 - AX-110605376 549.19–557.58 6.03 10.17 -10.93
2018CSS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 7.66 14.08 -14.22
SDW QSdw.saas-1DS 2017GHS 1DS:40 AX-94812958 - AX-110910133 8.97–21.51 4.35 10.59 -1.39
2018GHS 1DS:34 AX-94812958 - AX-109908110 8.97–11.57 6.93 12.28 -1.53
2019GHS 1DS:36 AX-94812958 - AX-110910133 8.97–21.51 6.98 12.84 -1.40
2017CSS 1DS:40 AX-94812958 - AX-110910133 8.97–21.51 2.73 7.24 -1.02
2018CSS 1DS:35 AX-94812958 - AX-110910133 8.97–21.51 3.93 7.79 -1.28
QSdw.saas-7D 2017GHS 7D:89 AX-109917900 - AX-110605376 324.36–557.58 4.40 6.53 -1.22
2018GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 8.24 14.81 -1.71
2019GHS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 13.10 22.20 -2.00
2017CSS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 5.77 10.09 -1.38
2018CSS 7D:91 AX-109937582 - AX-110605376 549.19–557.58 6.88 13.24 -1.76

a, b, c, d, e, f indicate the Chi-square value = 38.506 (P<0.001), 57.346 (P<0.001), 6.821 (P<0.01), 76.722 (P<0.001), 79.258 (P<0.001) and 82.713 (P<0.001) for segregation distortion at these markers, respectively.

Additive effect. Positive, negative mean Syn79, Syn80 alleles produced larger values, respectively. PH: plant height, TN: tiller number, SFW; shoot fresh weight, SDW: shoot dry weight