Table 1.
Stages | Range of Ks | Time (MYA) | Duplicate pairsa | Non-differentiated pairs | Differentiated pairs | Rate of differentiated pairs (%) | Neo-pairs | Subpairs | Rate of neo- in differentiated pairs (%) |
---|---|---|---|---|---|---|---|---|---|
I | = 0 | Recent | 1899 | 1891 | 8 | 0.42 | 0 | 8 | 0 |
II | 0–0.0072 | 0–0.55 | 5 | 3 | 2 | 40 | 0 | 2 | 0 |
III | 0.0072–0.0313 | 0.55–2.41 | 417 | 395 | 22 | 5.28 | 9 | 13 | 40.91 |
IV | 0.0313–0.0879 | 2.41–6.76 | 1351 | 1181 | 170 | 12.58 | 103 | 67 | 60.59 |
V | 0.0879–0.195 | 6.76–15 | 1369 | 1132 | 237 | 17.31 | 89 | 148 | 37.55 |
VI | > 0.195 | > 15 | 297 | 271 | 26 | 8.75 | 25 | 1 | 96.15 |
Total | – | – | 5338 | 4873 | 465 | 8.71 | 226 | 239 | 48.60 |
aA gene with a copy number of 3 will derive three duplicate pairs. And the genes with CDS length < 150 bp were excluded