Table 2.
Summary of clean reads mapped from MB, FB, MA and FA to the reference genome
Sample name | Total reads | Total mapped | Multiple mapped | Uniquely mapped | Reads mapped to ‘+’ | Reads mapped to ‘-’ |
---|---|---|---|---|---|---|
FB1 | 70,602,322 | 34,506,109 (48.87%) | 593,713 (0.84%) | 33,912,396 (48.03%) | 17,038,856 (24.13%) | 16,873,540 (23.9%) |
FB2 | 58,772,554 | 29,828,795 (50.75%) | 519,611 (0.88%) | 29,309,184 (49.87%) | 14,715,210 (25.04%) | 14,593,974 (24.83%) |
FB3 | 57,157,288 | 27,739,072 (48.53%) | 471,088 (0.82%) | 27,267,984 (47.71%) | 13,689,588 (23.95%) | 13,578,396 (23.76%) |
MB1 | 51,693,516 | 25,653,470 (49.63%) | 426,958 (0.83%) | 25,226,512 (48.8%) | 12,670,333 (24.51%) | 12,556,179 (24.29%) |
MB2 | 59,945,236 | 30,339,732 (50.61%) | 510,473 (0.85%) | 29,829,259 (49.76%) | 14,955,979 (24.95%) | 14,873,280 (24.81%) |
MB3 | 54,592,060 | 28,392,840 (52.01%) | 473,745 (0.87%) | 27,919,095 (51.14%) | 14,024,427 (25.69%) | 13,894,668 (25.45%) |
FA1 | 56,009,556 | 27,021,161 (48.24%) | 493,654 (0.88%) | 26,527,507 (47.36%) | 13,317,028 (23.78%) | 13,210,479 (23.59%) |
FA2 | 48,793,882 | 24,294,041 (49.79%) | 453,668 (0.93%) | 23,840,373 (48.86%) | 11,963,536 (24.52%) | 11,876,837 (24.34%) |
FA3 | 59,329,652 | 28,914,663 (48.74%) | 525,602 (0.89%) | 28,389,061 (47.85%) | 14,257,697 (24.03%) | 14,131,364 (23.82%) |
MA1 | 47,282,572 | 24,015,491 (50.79%) | 433,496 (0.92%) | 23,581,995 (49.87%) | 11,827,474 (25.01%) | 11,754,521 (24.86%) |
MA2 | 57,132,880 | 30,326,910 (53.08%) | 553,848 (0.97%) | 29,773,062 (52.11%) | 14,950,119 (26.17%) | 14,822,943 (25.94%) |
MA3 | 57,142,740 | 28,317,706 (49.56%) | 498,305 (0.87%) | 27,819,401 (48.68%) | 13,965,413 (24.44%) | 13,853,988 (24.24%) |