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. 2020 Feb 25;21(10):1461–1472. doi: 10.1002/cbic.201900751

Table 7.

Geometric criteria to identify conformations from molecular dynamics simulations as catalytically active binding poses for hydroxylation of aromatic or aliphatic C−H sites of metabolism (SOMs). Unless noted otherwise, these criteria were derived from combined QM/MM studies of Mulholland and co‐workers.63

Type of hydroxylation

Distance criteria

Angle criteria

aromatic

distance carbon of site of metabolism to ferryl oxygen

CSOM‐HSOM‐OFe angle should not be between 140° and 220°[a]

(CSOM‐OFe)<0.35 nm

aliphatic

distance of hydrogen of site of metabolism to ferryl oxygen

HSOM‐OFe‐Fe angle should be between 110° and 130°

(HSOM‐OFe)<0.35 nm

[a] Adapted from ref. 32.