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. Author manuscript; available in PMC: 2020 Sep 3.
Published in final edited form as: Hum Mutat. 2019 Sep 3;40(9):1373–1391. doi: 10.1002/humu.23874

Table 6.

Highest probability, incorrectly matched variants identified by more than one submission.

SID# (incorrectly attributed patients) Correct genome (patient) - Category Genomic position (hg19) Gene Disorders Transcript Nucleotide change Protein change gnomAD frequency Classification
2(97-O); 3(97-O); 4(97-W); 8(67-C) 97(D) -Connective, 67(M) - Eye 7:128040571:G:A IMPDH1 Retinitis pigmentosa 10, Leber congenital amaurosis 11 NM_000883.4 c.602C>T p.Thr201Met 0.002% (0.013% in AA) VUS
3(78-S); 4(78-Q); 6.1(78Q) 78(V) - Connective 7:94049587:C:T COL1A2 Ehlers-Danlos syndrome, Osteogenesis imperfecta NM_000089.3 c.2122C>T p.Arg708Trp 0.001% VUS
6.1(9-V); 6.2(9-V) 9(W) - Eye 1:2235335:C:T SKI Shprintzen-Goldberg syndrome NM_003036.4 c.1268C>T p.Pro423Leu 0.001% (0.002% EU) VUS
1 (95-H&M); 6.2(95-M) 95(C) - Eye 11:76905405:G:A MYO7A Usher syndrome, type 1B NM_000260.4 c.4159G>A p.Asp1387Asn 0.001% (0.007% AA) VUS
6.1(39-K); 6.2(39-R) 39(P) - Neurologic 15:49089695:G:A CEP152 Seckel syndrome 5, primary microcephaly 9 NM_001194998.2 c.343C>T p.Arg115Ter 0.0004% (0.003% Lat.) Pathogenic
6.1(79-F); 6.2(79-F) 79(K) - Connective 15:90174856:T:C KIF7 Acrocallosal syndrome, Joubert syndrome 12 NM_198525.3 c.2981A>G p.Gln994Arg 0.165% (0.306% Lat.) 2 homozygous VUS
3(21-V); 4(21-T) 21(G) - Neurologic X:153579297:T:C FLNA FLNA-related disorders NM_001110556.2 c.7136A>G p.Tyr2379Cys none VUS

Variants in this table may have been identified in additional submissions, but only highest probability variants per genome were considered (3 equal matches allowed).