Table 6.
SID# (incorrectly attributed patients) | Correct genome (patient) - Category | Genomic position (hg19) | Gene | Disorders | Transcript | Nucleotide change | Protein change | gnomAD frequency | Classification |
---|---|---|---|---|---|---|---|---|---|
2(97-O); 3(97-O); 4(97-W); 8(67-C) | 97(D) -Connective, 67(M) - Eye | 7:128040571:G:A | IMPDH1 | Retinitis pigmentosa 10, Leber congenital amaurosis 11 | NM_000883.4 | c.602C>T | p.Thr201Met | 0.002% (0.013% in AA) | VUS |
3(78-S); 4(78-Q); 6.1(78Q) | 78(V) - Connective | 7:94049587:C:T | COL1A2 | Ehlers-Danlos syndrome, Osteogenesis imperfecta | NM_000089.3 | c.2122C>T | p.Arg708Trp | 0.001% | VUS |
6.1(9-V); 6.2(9-V) | 9(W) - Eye | 1:2235335:C:T | SKI | Shprintzen-Goldberg syndrome | NM_003036.4 | c.1268C>T | p.Pro423Leu | 0.001% (0.002% EU) | VUS |
1 (95-H&M); 6.2(95-M) | 95(C) - Eye | 11:76905405:G:A | MYO7A | Usher syndrome, type 1B | NM_000260.4 | c.4159G>A | p.Asp1387Asn | 0.001% (0.007% AA) | VUS |
6.1(39-K); 6.2(39-R) | 39(P) - Neurologic | 15:49089695:G:A | CEP152 | Seckel syndrome 5, primary microcephaly 9 | NM_001194998.2 | c.343C>T | p.Arg115Ter | 0.0004% (0.003% Lat.) | Pathogenic |
6.1(79-F); 6.2(79-F) | 79(K) - Connective | 15:90174856:T:C | KIF7 | Acrocallosal syndrome, Joubert syndrome 12 | NM_198525.3 | c.2981A>G | p.Gln994Arg | 0.165% (0.306% Lat.) 2 homozygous | VUS |
3(21-V); 4(21-T) | 21(G) - Neurologic | X:153579297:T:C | FLNA | FLNA-related disorders | NM_001110556.2 | c.7136A>G | p.Tyr2379Cys | none | VUS |
Variants in this table may have been identified in additional submissions, but only highest probability variants per genome were considered (3 equal matches allowed).