Table 2.
A selection of the most important databases whose data is integrated into VarFish or that VarFish links out to. A full list can be found in the online manual available at https://varfish-server.rtfd.io contains an updated version
| Category | Database | |
|---|---|---|
| Integrated | Frequency | gnomAD |
| Clinical | ClinVar | |
| Phenotype | HPO | |
| Gene description | NCBI Gene & GeneRIF | |
| Constraint scores | gnomAD pLI/LOEUF | |
| Conservation | UCSC 100 Vertebrates | |
| Link-Out | Gene database | NCBI Entrez, GeneCards, PubMed, PanelApp |
| Variant score/tool | MutationTaster, varSEAKSplicing, VariantValidator | |
| Variant database | Beacon Network, VarSome | |
| Genome browser | Locus in local IGV, Public UCSC, DGV, ENSEMBL |