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. 2019 Nov 12;65(5):1010–1027. doi: 10.1002/lno.11366

Table 2.

Main characteristics and outcomes of published studies on hgcA biodiversity in environmental samples.

Method Studied environment Number of sequence/reads Number of OTUs Dominant group Dominant Deltaproteobacteria Reference
PCR and cloning Florida Everglades 220 168 Deltaproteobacteria Syntrophobacterales Bae et al. 2014
Wetlands 108 40 Methanomicrobia Geobacter Schaefer et al. 2014
Three gorges reservoir 151 151 Unidentified Unidentified Du et al. 2017
Rice paddy soils ∼ 1800 190

Proteobacteria

Euryarchaeota

Liu et al. 2018a
Laboratory and sediment slurries Unidentified Unidentified Ndu et al. 2018
Rice paddy soils 5 ? Unidentified Vishnivetskaya et al. 2018
Sulfate‐impacted lakes 300 174

Geobacteraceae

Methanomicrobia

Unidentified

Jones et al. 2019
PCR and high throughput sequencing Boreal lakes 78,642 225 Deltaproteobacteria Unidentified Bravo et al. 2018a
Lake Geneva 741,890 356 Deltaproteobacteria Unidentified (Geobacter) Bravo et al. 2018b
Rice paddy soils Liu et al. 2018a
Boreal forest soils 1,257,577 573 Deltaproteobacteria Unidentified (Geobacter) Xu et al. 2019
Metagenomics Global 823,000,000 Environmental compartment dependent Podar et al. 2015
Antarctic Sea‐ice and brine Nitrospinae Gionfriddo et al. 2016
Rice paddy soils 901,610,484 Methanoregula spp. Geobacter Liu et al. 2018b
Sulfate‐impacted lakes 885,923 27 Deltaproteobacteria Jones et al. 2019
Eight sites

381–102

1

Deltaproteobacteria Christensen et al. 2019
Tara gene catalogs oceans 111,530,851 10 Nitrospinae Desulfovibrionales Villar et al. 2019
Metaproteomics EFPC and Hinds Creek, TN 15,270–16,852 Deltaproteobacteria Christensen et al. 2019