Table 2.
Method | Studied environment | Number of sequence/reads | Number of OTUs | Dominant group | Dominant Deltaproteobacteria | Reference |
---|---|---|---|---|---|---|
PCR and cloning | Florida Everglades | 220 | 168 | Deltaproteobacteria | Syntrophobacterales | Bae et al. 2014 |
Wetlands | 108 | 40 | Methanomicrobia | Geobacter | Schaefer et al. 2014 | |
Three gorges reservoir | 151 | 151 | Unidentified | Unidentified | Du et al. 2017 | |
Rice paddy soils | ∼ 1800 | 190 |
Proteobacteria Euryarchaeota |
Liu et al. 2018a | ||
Laboratory and sediment slurries | Unidentified | Unidentified | Ndu et al. 2018 | |||
Rice paddy soils | 5 | ? | Unidentified | Vishnivetskaya et al. 2018 | ||
Sulfate‐impacted lakes | 300 | 174 |
Geobacteraceae Methanomicrobia Unidentified |
Jones et al. 2019 | ||
PCR and high throughput sequencing | Boreal lakes | 78,642 | 225 | Deltaproteobacteria | Unidentified | Bravo et al. 2018a |
Lake Geneva | 741,890 | 356 | Deltaproteobacteria | Unidentified (Geobacter) | Bravo et al. 2018b | |
Rice paddy soils | Liu et al. 2018a | |||||
Boreal forest soils | 1,257,577 | 573 | Deltaproteobacteria | Unidentified (Geobacter) | Xu et al. 2019 | |
Metagenomics | Global | 823,000,000 | Environmental compartment dependent | Podar et al. 2015 | ||
Antarctic Sea‐ice and brine | Nitrospinae | Gionfriddo et al. 2016 | ||||
Rice paddy soils | 901,610,484 | Methanoregula spp. | Geobacter | Liu et al. 2018b | ||
Sulfate‐impacted lakes | 885,923 | 27 | Deltaproteobacteria | Jones et al. 2019 | ||
Eight sites |
381–102 1 |
Deltaproteobacteria | Christensen et al. 2019 | |||
Tara gene catalogs oceans | 111,530,851 | 10 | Nitrospinae | Desulfovibrionales | Villar et al. 2019 | |
Metaproteomics | EFPC and Hinds Creek, TN | 15,270–16,852 | Deltaproteobacteria | Christensen et al. 2019 |