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. 2020 May 8;48(W1):W41–W47. doi: 10.1093/nar/gkaa362

Table 1.

Summary of input data and output statistics for the case studies. For each target, the corresponding reference PDB entry is given along with the length of the protein sequence and the number of input NOE cross-peaks used. The number of NOE restraints generated by ARIAweb at the last iteration is also shown. Ramachandran statistics, RMS of NOE restraints violations and bundle precision (mean pairwise RMSD) are presented as indicators for the quality of the generated structure ensembles

Target PDB Length. # NOE cross-peaks (input) # NOE restraints (output) Ramachandran statistics (%)b NOE RMS (Å) Bundle RMSDa (Å) Bundle Accuracya (Å)
Tudor 1G5V 56 2172 1160 90.0/10.0/0.0/0.0 0.112 0.35 (0.08) 1.01 (0.11)
HRDC 1D8B 91 3155 1698 89.3/8.4/1.3/1.0 0.064 0.44 (0.07) 1.36 (0.12)
CsfB# 5N7Y 2 × 49 1658 2 × 709c 77.8/18.9/0.0/3.3 0.143 0.33 (0.09) 1.12 (0.08)
RBM20 6SO9 112d 6185 2982 86.7/10.1/2.6/0.6 0.142 0.13 (0.02) 1.57 (0.07)
MANEC 2MSX 114 5201 2349 84.0/15.2/0.2/0.6 0.288 0.58 (0.11) 1.41 (0.10)
HypA# 6G81 117 5336 2048 82.0/15.3/1.7/1.0 0.173 0.74 (0.24) 1.96 (0.32)
HR5460A 2LAH 160 17250 4807 88.5/11.2/0.3/0.0 0.175 0.38 (0.06) 1.25 (0.11)

aMean RMSD (sd) for backbone atoms of well-ordered residues.

bPercentage of residues of the full-length sequence in the most favored/allowed/generously allowed/disallowed regions of the Ramachandran plot.

cRestraint list is automatically copied for each chain in symmetric dimer.

dIn complex with 6 bp RNA.

#protein containing Zn ion bound in tetrahedral coordination.