Table 1.
Comparison of CUPP versus eCAMI and dbCAN2 for CAZy family annotation provided as the F-score for selected genomes with curated CAZyme annotations. The table includes data obtained on seven annotated genomes of diverse taxonomical origin, namely: Botrytis cinerea B05.10, Malassezia restricta KCTC 27527, Vigna angularis Jingnong6, Bacteroides thetaiotaomicron VPI-5482, Bifidobacterium bifidum NCTC13001, Caulobacter segnis ATCC 21756 and Xanthomonas campestris ATCC 33913
| dbCAN2 tools F-score (+2 tools) | ||||||
|---|---|---|---|---|---|---|
| Origin of genomes | F-score CUPP | F-score eCAMI | Hotpep | dbCAN | Diamond | CAZymes/proteins |
| B. cinerea | 0.96 | 0.89 | 0.88 | 0.94 | 0.97 | 530/13703 |
| M. restricta | 0.95 | 0.91 | 0.88 | 0.91 | 0.98 | 82/4406 |
| V. angularis | 0.96 | 0.91 | 0.93 | 0.93 | 0.95 | 1395/37972 |
| Eukaryotes: average | 0.96 | 0.90 | 0.90 | 0.93 | 0.96 | |
| B. thetaiotaomicron | 0.97 | 0.88 | 0.95 | 0.83 | 0.96 | 417/4817 |
| B. bifidum | 0.98 | 0.90 | 0.88 | 0.91 | 0.94 | 65/1744 |
| C. segnis | 0.98 | 0.94 | 0.90 | 0.95 | 0.97 | 118/4103 |
| X. campestris | 0.98 | 0.97 | 0.94 | 0.96 | 0.98 | 156/4179 |
| Bacteria: average | 0.98 | 0.92 | 0.92 | 0.91 | 0.96 | |
| Total average | 0.97 | 0.91 | 0.91 | 0.92 | 0.96 | |