Table 1A.

Known markers of LC EMT upregulated in remnant LCs at 48 h PCS.

Gene ID	Gene description	Fold change (FC)	False discovery rate (FDR)	WT RPKM 0 h	WT RPKM 48 h	Reference
Tnc	Tenascin C	116	7.8E-44	1	156	[19]
Col1a1	Collagen, type I, alpha 1	83	2.1E-42	0.82	79	[139,140]
MMP9	Matrix metallopeptidase 9	70	7.4E-14	0.47	40	[141]
Fn1	Fibronectin 1	53	1.3E-44	2	135	[19]
Tgfβi	TGFβ induced protein	42	5.7E-52	7	359	[19,142]
Itga5	Integrin alpha 5	7	5.1E-24	6	50	[111]
Acta2	Alpha smooth muscle actin	4	3.3E-08	74	380	[139]
Tgfβr2	Transforming growth factor, beta receptor II	3	3.4E-07	3	10	[143]
Tgfβ1	Transforming growth factor, beta 1	3	6.1E-08	32	99	[144]
Mylk	Myosin light chain kinase	3	0.001	1.75	7	[145]
Grem1	Gremlin-1	380	1.6E-40	1.4	642	[81]