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. Author manuscript; available in PMC: 2021 Jun 26.
Published in final edited form as: J Mol Biol. 2020 May 21;432(14):4108–4126. doi: 10.1016/j.jmb.2020.05.013

Table 2.

XPRT-ppGpp structure re-refinement statistics.

Refinement
Resolution range (highest resolution bin) (Å) 34.23 – 1.8
(1.864 – 1.8)
Rwork/Rfreea (%) 15.98 / 20.83
r.m.s.b deviations
 Bonds (Å) 0.0038
 Angles (Å) 0.76
Ramachandran statistics (%)
 Favored 96.21
 Allowed 3.66
 Disallowed 0.13
Rotamer outliers (%) 0.00
No. atoms
 Macromolecules 11763
 Ligands 188
 Solvent 756
B factor (Å2)
 Macromolecules 25.98
 Ligands 25.31
 Solvent 33.25
a

Rwork/Rfree = Σ||Fobs|-|Fcalc||/|Fobs|, where the working the free R factors are calculated by using the working and free reflection sets, respectively. The free R reflections were held aside throughout refinement.

b

Root mean square