Skip to main content
. Author manuscript; available in PMC: 2021 Jun 19.
Published in final edited form as: ACS Synth Biol. 2020 May 7;9(6):1349–1360. doi: 10.1021/acssynbio.0c00038

Table 1.

Proteomics Analysis of FamD2 and FamC1 Expression from in vitro TT-Assay Containing Exogenous Plasmids FamD2 and FamC1, and Substrates 1 and 2 for 12-epi-Hapalindole U 4 Biosynthesisa

FamD2 FamC1
Total peptide 20 Total peptide 11
Unique peptide 20 Unique peptide 11
Coverage (%) 67.96 Coverage (%) 62.11
Annotated Peptide Sequence Sequence Positions PSM FamD2 Annotated Peptide Sequence Sequence Position PSM FamC1
[R].IRTDIINVAK.[T] FamD2 [7–16] 10 [K].RTTWTSNNGVGYVGPGTQFYNQLAPEGR.[N] FamC1 [70–97] 2
[R].TDIINVAK.[T] FamD2 [9–16] 6 [R].TTWTSNNGVGYVGPGTQFYNQLAPEGR.[N] FamC1 [70–97] 8
[K].TFGAEYSEK.[V] FamD2 [17–25] 3 [R].NIGYIYLSQNPGSGVAGFEQILDATLEPDTK.[Y] FamC1 [98–128] 35
[K].VLDEVFQVFGEQFADNSFMIR.[T] FamD2 [26–16] 19 [K].YTLTVDVGNLAGTFK.[G] FamC1 [129–143] 87
[R].TSNKQPDK.[L] FamD2 [47–54] 1 [K]. GLSFAGFPGYR. [V] FamC1 [144–154] 19
[K].LGCYFR.[Y] FamD2 [55–60] 3 [R].VELLAGDTVLAADHNNLFIK.[E] FamC1 [155–174] 306
[R].YHEEDESQLGLAWDIAR.[K] FamD2 [61–77] 4 [K].TSTVTYTSTAK. [D] FamC1 [180–190] 11
[R].KSGLLSDQGRPVDQLIPEICETFPIMADGVDFDVK.[H] FamD2 [78–112] 6 [K].DLHLGQK.[L] FamC1 [191–197] 20
[K].SGLLSDQGRPVDQLIPEICETFPIMADGVDFD VK. [H] FamD2 [79–112] 8 [R].LVNLLQDK.[F] FamC1 [202–209] 2
[K].IWQSIK.[G] FamD2 [118–123] 3 [K].FSGLDFDNVR.[L] FamC1 [210–219] 15
[K].GWPVQDAFK.[L] FamD2 [124–133] 5 [R].LVNLLQDKFSGLDFDNVR. [L] FamC1 [202–219] 2
[K].LSLPASVTTHSDFLK.[N] FamD2 [134–148] 7
[R].LCFYLPFLNR.[E] FamD2 [224–233] 2
[R].EAVPQNLLNPLLK.[K] FamD2 [234–246] 1
[R].EAVPQNLLNPLLKK.[Y] FamD2 [234–247] 2
[K].KYINEAPALVDNPGFILGWSFGPQGGK.[G] FamD2 [247–273] 4
[K].YINEAPALVDNPGFILGWSFGPQGGK.[G] FamD2 [248–273] 2
[K].VDVDYHGR.[T] FamD2[279–286] 1
[R].TVPLFMK.[V] FamD2 [287–293] 1
[K].VHSQPLPK.[A] FamD2 [294–301] 2
FamD2 FamC1
MNDVNRIRTDIINVAKTFGAEYSEKVLDEVFQVFGEQFADNSFMIRTSNKQPDKLGCYFRYHEEDESQLGLAWDIARKSGLLSDQGRPVDQLIPEICETFPIMADGVDFDVKHGLAKIWQSIKGWPVQDAFKLSLPASVTTHSDFLKNHHLDALYAFGIDYHHSSVNLYFDTYHPKHHTSEYYKNLLQDLQFQPPSDELLELLTNNGEIALTFNFASPRIERLCFYLPFLNREAVPQNLLNPLLKKYINEAPALVDNPGFILGWSFGPQGGKGTYTKVDVDYHGRTVPLFMKVHSQPLPKAADFALAQ, 309 residues MKRKLIVAVWLIFICLGINTPAHATSAVSIPINNAGFENPFMDWDDYTIDTPPGWTTYDPNNLVPEKRTTWTSNNGVGYVGPGTQFYNQLAPEGRNIGYIYLSQNPGSGVAGFEQILDATLEPDTKYTLTVDVGNLAGTFKGLSFAGFPGYRVELLAGDTVLAADHNNLFIKEGEFKTSTVTYTSTAKDLHLGQKLGIRLVNLLQDKFSGLDFDNVRLTTEPTET, 227 residues
a

The sequence highlighted in yellow represents the coverage of the synthesized protein using proteomic analysis.