Table 3. %GC, %GC3, ENA and CAI values of RVFV segments.
%GC | %GC3 | ENC | CAIa | CAIb | ||
---|---|---|---|---|---|---|
L segment | Group 1 | 43.46 | 46.03 | 51.29 | 0.764 | 0.693 |
Group 2 | 43.50 | 46.00 | 51.43 | 0.763 | 0.691 | |
Group 3 | 43.88 | 46.55 | 51.45 | 0.764 | 0.697 | |
Group 4 | 43.50 | 45.85 | 51.30 | 0.763 | 0.690 | |
Group 5 | 43.63 | 46.25 | 51.30 | 0.765 | 0.688 | |
M segment | Group 1 | 46.32 | 45.34 | 49.49 | 0.762 | 0.666 |
Group 2 | 46.20 | 45.25 | 49.58 | 0.764 | 0.666 | |
Group 3 | 46.34 | 45.49 | 49.74 | 0.761 | 0.665 | |
Group 4 | 46.22 | 45.46 | 50.00 | 0.765 | 0.668 | |
Group 5 | 45.98 | 44.48 | 49.98 | 0.761 | 0.671 | |
S (NP) segment | Group 1 | 50.55 | 53.27 | 60.32 | 0.748 | 0.696 |
Group 2 | 50.54 | 53.78 | 60.82 | 0.753 | 0.696 | |
Group 3 | 49.90 | 51.50 | 60.51 | 0.748 | 0.688 | |
Group 4 | 50.09 | 52.53 | 60.99 | 0.747 | 0.700 | |
Group 5 | 51.75 | 56.90 | 61.00 | 0.762 | 0.716 | |
S (NS) segment | Group 1 | 46.73 | 43.53 | 55.29 | 0.745 | 0.693 |
Group 2 | 46.75 | 43.80 | 55.25 | 0.745 | 0.695 | |
Group 3 | 46.79 | 43.77 | 54.54 | 0.754 | 0.703 | |
Group 4 | 46.70 | 43.94 | 55.64 | 0.743 | 0.698 | |
Group 5 | 46.85 | 44.00 | 53.23 | 0.754 | 0.704 |
CAIa: the difference in codon usage bias against Homo sapiens as reference set, CAIb: the difference in codon usage bias against Aedes aegypti as reference set