Table 4. Gene models found in delimitated region CDRK resistance loci against anthracnose and angular leaf spot were fine-mapped, gene position in reference genome v1.0 and annotation.
Gene Model in P. vulgaris | Homolog in A. thaliana | E-valuea | Identitya | Functional annotation on TAIRb | Functional annotation on Phytozomec |
---|---|---|---|---|---|
Phvul.001G245300 | AT4G18640 | 8 × 10−169 | 43.40% | Male Discoverer 2 | Protein tyrosine kinase (pkinase_tyr) // leucine rich repeat n-terminal domain (lrrnt_2) |
Phvul.001G246000 | AT5G05450 | 0 | 70.50% | RNA Helicase 18 | ATP-dependent RNA helicase ddx55/spb4 [ec:3.6.4.13] (ddx55, spb4) |
Phvul.001G246100 | AT2G37390 | 1 × 10−105 | 52.60% | Sodium Potassium Root Defective 2 | Cation-dependent mannose-6-phosphate receptor |
Phvul.001G246200 | AT2G40320 | 0 | 69.90% | Trichome Birefringence-Like 33 | Protein trichome birefringence-like 33 |
Phvul.001G246300 | AT2G40330 | 1 × 10−76 | 56.90% | ABA Receptor PYL6 | Abscisic acid receptor pyl5 |
Phvul.001G246400 | AT5G20400 | 0 | 48.30% | Flavanone 3 Hydroxylase-like | SNF2 domain-containing protein classy 1-related |
Phvul.001G246800 | AT3G50740 | 0 | 60.60% | UDP-Glucosyl Transferase 72E1 | Leucine-rich repeat receptor-like protein kinase imk3-related |
aE-values and Identity for BLASTp analysis performed on NCBI (National Center for Biotechnology Information; https://www.ncbi.nlm.nih.gov)
b Functional gene annotation resource: TAIR—The Arabidopsis Information Resource (https://www.arabidopsis.org)
cFunctional gene annotation resource: Phytozome—Common bean reference genome v1.0 (https://phytozome.jgi.doe.gov#