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. 2020 Jun 23;11:452. doi: 10.3389/fgene.2020.00452

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Copyright © 2020 du Preez, Breeds, Burger, Swiegers, Truter and Botha.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Differential gene expression between RWA biotypes SA1 and SAM. (A) SA1 and SAM gene expression as log10 fragments per kilobase of transcript per million mapped reads (FPKM) average over three biological replicates for transcripts retained for differential expression (DE) analysis with edgeR (n = 64,214). Benjamini-Hochberg (BH) corrected p > 0.05 and absolute fold change [FC] > 1.5). (B) Comparison of number of transcripts expressed in SA1 and SAM. (C) Significant differences were observed in the expression of DnDNMT3 and DnTET in SA1 and SAM; edgeR; BH corrected p > 0.05 and absolute fold change [FC] > 1.5.