Table 2.
Basic statistics in addition to the assembly quality metrics for the studied D. solani genomes
| Genome | No. of scaffolds | No. of N bases | Genome size (bp) | Largest contig (bp) | N50 | L50 | %GC | Genbank accession no. | Reference |
|---|---|---|---|---|---|---|---|---|---|
| IFB0167 | 1 | 0 | 4,922,289 | 4,922,289 | 4,922,289 | 1 | 56.25 | CP051457 | This study |
| IFB0212 | 2 | 0 | 4,909,935 | 3,946,010 | 3,946,010 | 1 | 56.25 | JABAON000000000 | This study |
| IFB0231 | 1 | 0 | 4,924,702 | 4,924,702 | 4,924,702 | 1 | 56.24 | CP051458 | This study |
| IFB0311 | 3 | 0 | 4,913,261 | 2,394,283 | 1,850,246 | 2 | 56.24 | JABAOO000000000 | This study |
| IFB0417 | 1 | 0 | 4,924,102 | 4,924,102 | 4,924,102 | 1 | 56.24 | CP051459 | This study |
| IFB0421 | 1 | 0 | 4,934,537 | 4,934,537 | 4,934,537 | 1 | 56.24 | CP051460 | This study |
| IFB0487 | 4 | 0 | 4,882,124 | 3,440,832 | 3,440,832 | 1 | 56.23 | JABAOP000000000 | This study |
| IFB0695 | 7 | 0 | 4,904,769 | 2,442,930 | 755,734 | 2 | 56.25 | JABAOQ000000000 | This study |
| IFB0099 | 1 | 0 | 4,932,920 | 4,932,920 | 4,932,920 | 1 | 56.24 | CP024711 | [31, 76] |
| IFB0158 | 37 | 395 | 4,879,070 | 772,123 | 360,663 | 5 | 56.24 | PENA00000000 | [31] |
| IFB0221 | 38 | 394 | 4,878,255 | 774,432 | 360,663 | 5 | 56.24 | PEMZ00000000 | [31] |
| IFB0223 | 1 | 0 | 4,937,554 | 4,937,554 | 4,937,554 | 1 | 56.24 | CP024710 | [31] |
| IPO 2222 | 1 | 9200 | 4,867,258 | 4,867,258 | 4,867,258 | 1 | 56.22 | AONU01000000 | [44] |
| GBBC 2040 | 1 | 27,548 | 4,860,047 | 4,860,047 | 4,860,047 | 1 | 56.34 | AONX01000000 | [44] |
| MK10 | 3 | 3800 | 4,935,237 | 4,934,019 | 4,934,019 | 1 | 56.21 | AOOP01000000 | [44] |
| MK16 | 3 | 2100 | 4,870,382 | 4,865,372 | 4,865,372 | 1 | 56.23 | AOOQ01000000 | [44] |
| D s0432–1 | 4 | 0 | 4,904,518 | 2,278,175 | 1,562,114 | 2 | 56.20 | AMWE01000000 | [38] |
| PPO 9019 | 24 | 30 | 4,866,823 | 1,553,733 | 485,395 | 3 | 56.25 | JWLS01000000 | [39] |
| PPO 9134 | 22 | 187 | 4,870,830 | 1,553,748 | 485,873 | 3 | 56.24 | JWLT01000000 | [39] |
| RNS 05.1.2A | 37 | 0 | 4,985,571 | 570,255 | 305,078 | 7 | 56.13 | JWMJ01000000 | [39] |
| RNS 07.7.3B | 24 | 325 | 4,871,815 | 688,619 | 485,311 | 4 | 56.24 | JWLR01000000 | [39] |
| RNS 08.23.3.1A | 1 | 12,124 | 4,923,743 | 4,923,743 | 4,923,743 | 1 | 56.25 | AMYI01000000 | [60] |
The genomes depicted in bold have been de novo sequenced and assembled in the frames of this research. The versions of the included reference genomes are the ones downloaded from the Genbank database for Golanowska et al. 2018 [31]