Table 4.
PCR amplification size, phylogenetic data and the substitution models used in the phylogenetic analysis for each gene region and for the combined datasets
| ITS | TEF1 | BT1 | MS204 | RPB2 | Combined datasets | |
|---|---|---|---|---|---|---|
| Approximate amplicon size (bp) | 550 | 520 | 420 | 760 | 940 | – |
| Number of taxa analysed | 153 | 147 | 111 | 91 | 105 | 76 |
| Aligned characters (bp) | 734 | 586 | 440 | 785 | 929 | 3344 |
| Number of parsimony-uninformative characters | 621 | 143 | 357 | 519 | 538 | 2438 |
| Number of parsimony-informative characters | 114 | 423 | 82 | 266 | 371 | 1121 |
| Number of trees retained | 108 | 396 | 1 | 2448 | 420 | 100 |
| Consistency index | 0.865 | 0.499 | 0.739 | 0.791 | 0.738 | 0.607 |
| Homoplasy index | 0.135 | 0.501 | 0.261 | 0.209 | 0.262 | 0.393 |
| Rescaled consistency index | 0.850 | 0.459 | 0.703 | 0.748 | 0.696 | 0.555 |
| Retention index | 0.982 | 0.919 | 0.951 | 0.946 | 0.943 | 0.914 |
| Tree Length | 163 | 1675 | 138 | 546 | 722 | 2642 |
| Substitution model | TPM2uf + G | GTR + G | GTR + G | TVM + G | TrN + G | GTR + G |