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. 2020 Jun 10;8:574. doi: 10.3389/fbioe.2020.00574

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Copyright © 2020 Popp and Centler.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Simulating batch growth of a 773 species gut microbiome with 166 compounds, using identical initial biomass concentrations for all species and identical compound concentrations for all compounds. The legends only account for the 10 most abundant entities at the end of the simulation, with compound abbreviations h[e]: proton, ac[e]: acetate, for[e]: formate, h2[e]: hydrogen, h2o[e]: water, h2s[e]: hydrogen sulfide, ade[e]: adenine, gua[e]: guanine, nac[e]: nicotinate, thymd[e]: thymidine.